EMAGE Publications

Richardson L, Venkataraman S, Stevenson P, Yang Y, Moss J, Graham L, Burton N, Hill B, Rao J, Baldock RA, Armit C. (2014) EMAGE mouse embryo spatial gene expression database: (2014 update) Nucleic Acids Res. 42(1):D835-44. doi: 10.1093/nar/gkt1155

Richardson L, Stevenson P, Venkataraman S, Yang Y, Burton N, Rao J, Christiansen JH, Baldock RA, Davidson DR. EMAGE: Electronic Mouse Atlas of Gene Expression book chapter in Mark Lewandoski (ed.), Mouse Molecular Embryology, Methods in Molecular Biology, vol. 1092, Springer Science+Business Media New York 2014 doi:10.1007/978-1-60327-292-6_5

Armit C, Venkataraman S, Richardson L, Stevenson P, Moss J, Graham L, Ross A, Yang Y, Burton N, Rao J, Hill B, Rannie D, Wicks M, Davidson D, Baldock R, eMouseAtlas, EMAGE, and the spatial dimension of the transcriptome, Mammalian Genome 23 (2012) 514-524 doi:10.1007/s00335-012-9407-1

Armit C (2012) Staging of Mouse Development book chapter in the EMBO ‘Anatomy and Embryology of the Mouse’ course book.

Stevenson P, Richardson L, Venkataraman S, Yang Y, and Baldock R, The BioMart interface to the eMouseAtlas gene expression database EMAGE. Database (2011) Vol. 2011 doi:10.1093/database/bar029.

Richardson L, Venkataraman S, Stevenson P, Yang Y, Burton N, Rao J, Fisher M, Baldock RA, Davidson DR, Christiansen JH. EMAGE mouse embryo spatial gene expression database: 2010 update. Nucleic Acids Research 2009; doi: 10.1093/nar/gkp763

Christiansen JH, Davidson D and Baldock RA. Management of Spatially Organized Biological Data using EMAGE. In: Bioinformatics for Systems Biology, 2nd edition, Ed. S Krawetz (Humana Press, New York, 2009) pp461-476.

Venkataraman S, Stevenson P, Yang Y, Richardson L, Burton N, Perry TP, Smith P, Baldock RA, Davidson DR, Christiansen JH. EMAGE: Edinburgh Mouse Atlas of Gene Expression: 2008 update. Nucleic Acids Res. 2008 36:D860-5.

Deutsch, E.W., Ball, C.A., Berman, J.J., Bova, G.S., Brazma, A., Bumgarner, R.E., Campbell, D., Causton, H.C., Christiansen, J.H., Dauga, D., Davidson, D.R., Gimenez, G., Goo, Y.A., Grimmond, S., Henrich, T., Herrmann, B.G., Johnson, M.H., Korb, M., Mills, J.C., Oudes, A.J., Parkinson, H.E., Pascal, L.E., Pollet, N., Quackenbush, J., Ramialison, M., Ringwald, M., Salgado, D., Sansone, S-A., Sherlock, G., Stoeckert, C.J.Jr., Swedlow, J., Taylor, R.C., Walashek, L., Warford, A., Wilkinson, D.G., Zhou, Y., Zon, L.I., Liu, A.Y., True, L.D. Minimum Information Specification For In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE), Nature Biotechnology. 2008 26:305-312.

Deutsch EW, Ball CA, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen J, Davidson D, Eichner LJ, Goo YA, Grimmond S, Henrich T, Johnson MH, Korb M, Mills JC, Oudes A, Parkinson HE, Pascal LE, Quackenbush J, Ramialison M, Ringwald M, Sansone SA, Sherlock G, Stoeckert CJ Jr, Swedlow J, Taylor RC, Walashek L, Zhou Y, Liu AY, True LD. Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). OMICS. (2006) Summer;10(2):205-8.

Christiansen JH, Yang Y, Venkataraman S, Richardson L, Stevenson P, Burton N, Baldock RA and Davidson DR. EMAGE: a spatial database of gene expression patterns during mouse embryo development. Nucl. Acids Res. 34 (2006): D63.

Baldock R, Bard J, Burger A, Burton N, Christiansen J, Feng G, Hill B, Houghton D, Kaufman M, Rao J, Sharpe J, Ross A, Stevenson P, Venkataraman S, Waterhouse A, Yang Y, Davidson D. EMAP and EMAGE: A Framework for Understanding Spatially Organised Data, Neuroinformatics 1 (2003) pp309-325.

Davidson D and Baldock R. Bioinformatics Beyond Sequence: Mapping Gene Function in the Embryo, Nature Reviews Genetics 2 (2001) pp409-418.

Davidson D, Bard J, Kaufman M and Baldock RA, The Mouse Atlas Database: a community resource for mouse development, Trends in Genetics 17 (2001) pp49-51.

Davidson D, Baldock R, Bard J, Kaufman M, Richardson J E, Eppig J and Ringwald, M., Gene expression databases. In: In situ Hybridization, a practical approach, 2nd edition, Ed. D Wilkinson (IRL Press, Oxford, 1998) pp190-214.

Ringwald M, Baldock, RA, Bard J, Kaufman MH, Eppig JT, Richardson JE, Nadeau, JH. and Davidson D, A database for mouse development, Science 265 (1994) pp2033-2034

Baldock RA, Bard J, Kaufman MH and Davidson D, A real mouse for your computer, BioEssays 14 (1992) pp501-502.

 

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