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BC016548 Gene Detail
Summary
  • Symbol
    BC016548
  • Name
    cDNA sequence BC016548
  • Synonyms
    MGC:27847
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2448478
    NCBI Gene: 211039
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr2:103207988-103219389 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 54.43 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    61 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448478
 lncRNA gene Chr2:103207988-103219389 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005978
 lincRNA gene Chr2:105358217-105369510 (-)
A/J MGP_AJ_G0005971
 lincRNA gene Chr2:101007657-101019018 (-)
AKR/J MGP_AKRJ_G0005945
 lincRNA gene Chr2:103744886-103756111 (-)
BALB/cJ MGP_BALBcJ_G0005949
 lincRNA gene Chr2:101292172-101303533 (-)
C3H/HeJ MGP_C3HHeJ_G0005897
 lincRNA gene Chr2:104101502-104112901 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006109
 lincRNA gene Chr2:108901672-108912951 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005440
 lincRNA gene Chr2:96686875-96698208 (-)
CAST/EiJ MGP_CASTEiJ_G0005832
 lincRNA gene Chr2:104565271-104578460 (-)
CBA/J MGP_CBAJ_G0005882
 lincRNA gene Chr2:112615833-112627194 (-)
DBA/2J MGP_DBA2J_G0005903
 lincRNA gene Chr2:100574520-100586059 (-)
FVB/NJ MGP_FVBNJ_G0005927
 lincRNA gene Chr2:99574028-99585351 (-)
LP/J MGP_LPJ_G0005983
 lincRNA gene Chr2:105492997-105504290 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005914
 lincRNA gene Chr2:116537792-116549636 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006107
 lincRNA gene Chr2:103966081-103977312 (-)
PWK/PhJ MGP_PWKPhJ_G0005781
 lincRNA gene Chr2:100078619-100090417 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005693
 lincRNA gene Chr2:103186056-103197414 (-)
WSB/EiJ MGP_WSBEiJ_G0005885
 lincRNA gene Chr2:104669106-104681370 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving BC016548
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    740
  • Tissues
    7
  • cDNA Data
    2
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 211039 NCBI Gene Model | MGI Sequence Detail 11402 C57BL/6J ±  kb
transcript NR_130964 RefSeq | MGI Sequence Detail 807 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 16
    Developmental Gene Expression 1
    Phenotypes 4
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory