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Ppnr Gene Detail
Summary
  • Symbol
    Ppnr
  • Name
    per-pentamer repeat gene
  • Synonyms
    mp41
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1349458
    NCBI Gene: 26930
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr19:55830104-55834329 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 51.63 cM, cytoband D2
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    26 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1349458
 lncRNA gene Chr19:55830104-55834329 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036927
 sense intronic lncRNA gene Chr19:56147401-56153463 (+)
A/J MGP_AJ_G0036915
 sense intronic lncRNA gene Chr19:53381666-53386571 (+)
AKR/J MGP_AKRJ_G0036862
 sense intronic lncRNA gene Chr19:55062946-55067124 (+)
BALB/cJ MGP_BALBcJ_G0036906
 sense intronic lncRNA gene Chr19:53468704-53473230 (+)
C3H/HeJ MGP_C3HHeJ_G0036592
 sense intronic lncRNA gene Chr19:55296574-55301883 (+)
C57BL/6NJ MGP_C57BL6NJ_G0037419
 sense intronic lncRNA gene Chr19:57514504-57518715 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0034479
 sense intronic lncRNA gene Chr19:52317289-52321390 (+)
CAST/EiJ MGP_CASTEiJ_G0035781
 sense intronic lncRNA gene Chr19:55313242-55317269 (+)
CBA/J MGP_CBAJ_G0036567
 sense intronic lncRNA gene Chr19:60347046-60353160 (+)
DBA/2J MGP_DBA2J_G0036743
 sense intronic lncRNA gene Chr19:53180664-53185230 (+)
FVB/NJ MGP_FVBNJ_G0036694
 sense intronic lncRNA gene Chr19:52889183-52893327 (+)
LP/J MGP_LPJ_G0036790
 sense intronic lncRNA gene Chr19:56014395-56020551 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0036700
 sense intronic lncRNA gene Chr19:59702866-59708054 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0037536
 sense intronic lncRNA gene Chr19:55287357-55291512 (+)
PWK/PhJ MGP_PWKPhJ_G0035474
 sense intronic lncRNA gene Chr19:53119035-53123076 (+)
SPRET/EiJ MGP_SPRETEiJ_G0035286
 sense intronic lncRNA gene Chr19:53953347-53957320 (+)
WSB/EiJ MGP_WSBEiJ_G0035981
 sense intronic lncRNA gene Chr19:55406320-55411524 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    23
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000099746 Ensembl Gene Model | MGI Sequence Detail 4226 C57BL/6J ±  kb
transcript ENSMUST00000190974 Ensembl | MGI Sequence Detail 3525 Not Applicable  
polypeptide Q78DZ5 UniProt | EBI | MGI Sequence Detail 133 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 13
    Developmental Gene Expression 1
    Gene Ontology 1
  • Earliest
    J:51738 Ishida N, et al., Molecular cloning of a gene under control of the circadian clock and light in the rodent SCN. Brain Res Mol Brain Res. 1994 Oct;26(1-2):197-206
  • Latest
    J:190322 Archambaud C, et al., Impact of lactobacilli on orally acquired listeriosis. Proc Natl Acad Sci U S A. 2012 Oct 9;109(41):16684-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory