EMAGE mouse gene expression spatial database

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EMAGE:10061

Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 ( MGI:1890357)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_000116. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_000116_01	euxassay_000116_02	euxassay_000116_03	euxassay_000116_04

euxassay_000116_05	euxassay_000116_06	euxassay_000116_07	euxassay_000116_08	euxassay_000116_09

euxassay_000116_10	euxassay_000116_11	euxassay_000116_12	euxassay_000116_13	euxassay_000116_14

euxassay_000116_15	euxassay_000116_16	euxassay_000116_17	euxassay_000116_18	euxassay_000116_19

euxassay_000116_20	euxassay_000116_21	euxassay_000116_22	euxassay_000116_23	euxassay_000116_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10061_wholemount_strong.wlz

10061_wholemount_moderate.wlz

10061_wholemount_weak.wlz

10061_wholemount_possible.wlz

10061_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10061_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

foot mesenchyme

strong

regional

strong expression: see section 08 09 10

physiological umbilical hernia

strong

regional

strong expression: see section 09 10 11 13 14 15 16 17 18 19 20 21 moderate expression: see section 22

lens

weak

homogeneous

weak expression: see section 02

lens capsule

weak

homogeneous

weak expression: see section 01 02

retina

weak

regional

weak expression: see section 02 03 04

metanephros

moderate

regional

moderate expression: see section 09 10 19 20 21 22 23 24

renal cortex

strong

regional

strong expression: see section 13 moderate expression: see section 11

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T1521
Entity Detected:	Igf2bp1, insulin-like growth factor 2 mRNA binding protein 1 ( MGI:1890357)
Sequence:	sense strand is shown >T1521 ACAGAACTGGAGGGGCGGGTGGAGGGCCGGTGTGCTCTTCCCAGCAGGCCTGAGAATGAGTGGGAATCAG GGCATTTGGGCCTGGCTGGAGATCAGGTTTGCACACTGTCTTGAGAACAATGTTCCAGTGAGGAATCCTG ATCTCTCGCCCCCAATTGAGCCAGCTGGCCACAGCCCACCCCTTGGAATATCACCATTGCAATCATAGCT TGGGTTGCTTTTAAACGTGGATTGTCTTGAAGTTCTCCAGCCTCCATGGAAGGATGGGTCAGATCCCAGT GGGGAAGAGAAATAAAATTTCCTTCAGGTTTTATAAAACCTCAAAGGATGGTTTGTTTCTTAACCCCTCC AAATCTTTCTAACCTTCTTGGTTAATTCACGAAAATTCCTCCCGTTCTTAATGTCCTGACCAGTAACTTA CCTCTTCCTGGATCCATTCACACTGTTTCAGCCTTGTTGTGCTGGGGTGGGGGAGGGGCGGGAGGAGGGC TAGAACACAGCTTTGTTTACAATATTAACTC
Notes:	The probe template was PCR amplified from IMAGE:805632 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:805632 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10062 same embryo
	EMAGE:10064 same embryo
	EMAGE:10063 same embryo
	EMAGE:10060 same embryo
	EurExpress:euxassay_000116 same experiment
	MGI:4825536 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source