EMAGE mouse gene expression spatial database

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EMAGE:11906

Itgal integrin alpha L ( MGI:96606)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_009583. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_009583_01	euxassay_009583_02	euxassay_009583_03	euxassay_009583_04

euxassay_009583_05	euxassay_009583_06	euxassay_009583_07	euxassay_009583_08	euxassay_009583_09

euxassay_009583_10	euxassay_009583_11	euxassay_009583_12	euxassay_009583_13	euxassay_009583_14

euxassay_009583_15	euxassay_009583_16	euxassay_009583_17	euxassay_009583_18	euxassay_009583_19

euxassay_009583_20	euxassay_009583_21	euxassay_009583_22	euxassay_009583_23	euxassay_009583_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11906_wholemount_strong.wlz

11906_wholemount_moderate.wlz

11906_wholemount_weak.wlz

11906_wholemount_possible.wlz

11906_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11906_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

thymus primordium

moderate

regional

moderate expression: see section 13 14 15 weak expression: see section 12

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T36527
Entity Detected:	Itgal, integrin alpha L ( MGI:96606)
Sequence:	sense strand is shown >T36527 CTTGGACTTCCACTTCCACTTCCCGATCTGCATTCAAGACCTCATCTCCCCTATCAATGTCTCCCTGAAT TTCTCTCTTTTGGAGGAAGAAGGAACACCAAGGGACCAAAAGGGCAGGGCCATGCAGCCTATCCTGAGAC CTTCAATCCACACAGTGACTAAGGAGATCCCTTTTGAGAAGAACTGTGGTGAAGATAAGAAGTGTGAGGC AAACCTGACCCTGTCATCCCCTGCCAGATCTGGACCCCTGCGTCTGATGTCCTCTGCCAGCCTTGCTGTG GAGTGGACACTGAGCAACTCAGGGGAAGATGCCTACTGGGTGCGATTAGACCTGGACTTCCCTCGGGGAC TCTCCTTCCGGAAAGTGGAGATGCTTCAGCCACACAGCCGAATGCCTGTGAGCTGCGAGGAGCTCACCGA GGGGTCAAGTCTCCTGACTAAGACACTGAAATGCAATGTAAGCTCTCCCATCTTCAAAGCAGGCCAGGAG GTGAGCCTCCAGGTGATGTTTAACACGCTACTCAACAGCTCCTGGGAAGACTTCGTCGAGCTGAATGGCA CTGTGCACTGTGAGAATGAGAACTCAAGCCTCCAGGAGGACAACTCAGCCGCCACCCACATTCCTGTCCT GTACCCTGTCAACATCCTTACTAAGGAGCAGGAGAACTCCACCCTCTATATCAGTTTCACCCCTAAAGGT CCCAAGAC
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 97964. Forward Primer - name:097964_F_cDNA_Itgal, sequence:CTTGGACTTCCACTTCCACTTC; Reverse Primer - name:097964_N_SP6_cDNA_Itgal, sequence:GTCTTGGGACCTTTAGGGGTG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11905 same embryo
	EMAGE:11904 same embryo
	EMAGE:11907 same embryo
	EurExpress:euxassay_009583 same experiment
	MGI:4825649 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source