EMAGE mouse gene expression spatial database

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EMAGE:14073

Axl AXL receptor tyrosine kinase ( MGI:1347244)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001756. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001756_01	euxassay_001756_02	euxassay_001756_03	euxassay_001756_04

euxassay_001756_05	euxassay_001756_06	euxassay_001756_07	euxassay_001756_08	euxassay_001756_09

euxassay_001756_10	euxassay_001756_11	euxassay_001756_12	euxassay_001756_13	euxassay_001756_14

euxassay_001756_15	euxassay_001756_16	euxassay_001756_17	euxassay_001756_18	euxassay_001756_19

euxassay_001756_20

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14073_wholemount_strong.wlz

14073_wholemount_moderate.wlz

14073_wholemount_weak.wlz

14073_wholemount_possible.wlz

14073_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14073_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

mesenchyme

moderate

homogeneous

moderate expression: see section 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 20

head mesenchyme

moderate

homogeneous

moderate expression: see section 01 02

vertebral axis musculature

moderate

homogeneous

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 18 20

gland

moderate

homogeneous

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 20

visceral organ system

moderate

homogeneous

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 20

integumental system

moderate

homogeneous

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 20

cardiovascular system

moderate

homogeneous

moderate expression: see section 07 08 09 10 11 12 13 14 15 16 17

skeleton

moderate

homogeneous

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 20

tail

moderate

homogeneous

moderate expression: see section 09 10 11 12 13

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2762
Entity Detected:	Axl, AXL receptor tyrosine kinase ( MGI:1347244)
Sequence:	sense strand is shown >T2762 GGCCTCGAGGCCAGATTCGGCACGAGGGTTTGAGTTTAGAGTTCAAAGTTCTCAAAGATGATGAGTCTTT GGACCGAGATGCTTGTTTCTAGGTCTGCAGCGCTGTTGCTATAGACAGGCCCACTGCTCGAAGGCTCTGA GATTCTATGGCTCTAGATTTTTCTGGCTCTATAATTCGTGGCAATGCTCCCATGGTTTTAGGTTGCACGA CTCTGAGATTCCAGGACCTAAGGCTTCTAGACTTTATTTTTCTGGAGCCAGGGGTCCTGTCAGTGGAAGA TTGTAGATTTTTAAATTCTAAAGATTCTAGGCATGAAGGTTCTAAGGCATACTGCTTCTCCAGTTTAACA GTTTAGGGCTCATGTTGGAATACTCCAGATCATAATGTTTCAAACTTTTATTTTTTTTAATTTCTAAGAC CCCAGTGATGGTCAACTACAGATTCTGAAGCCTTATGACCATAGATTCTTTTATATAAAAATCCTGTATC TCAAGGAAATATGATTCTAGACTCTGAAATTCCAAAGCTTTAAGAGTCTCCAGATGGAGTTTCTA
Notes:	The probe template was PCR amplified from IMAGE:1514654 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1514654 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14072 same embryo
	EMAGE:14071 same embryo
	EurExpress:euxassay_001756 same experiment
	MGI:4823367 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source