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EMAGE:19539

Agpat5 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) ( MGI:1196345)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19539 EMAGE:19539 EMAGE:19539 EMAGE:19539 EMAGE:19539
"Pseudo-wholemount" of euxassay_004916. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004916_01 euxassay_004916_02 euxassay_004916_03 euxassay_004916_04
EMAGE:19539 EMAGE:19539 EMAGE:19539 EMAGE:19539 EMAGE:19539
euxassay_004916_05 euxassay_004916_06 euxassay_004916_07 euxassay_004916_08 euxassay_004916_09
EMAGE:19539 EMAGE:19539 EMAGE:19539 EMAGE:19539 EMAGE:19539
euxassay_004916_10 euxassay_004916_11 euxassay_004916_12 euxassay_004916_13 euxassay_004916_14
EMAGE:19539 EMAGE:19539 EMAGE:19539 EMAGE:19539 EMAGE:19539
euxassay_004916_15 euxassay_004916_16 euxassay_004916_17 euxassay_004916_18 euxassay_004916_19
EMAGE:19539 EMAGE:19539 EMAGE:19539 EMAGE:19539
euxassay_004916_20 euxassay_004916_21 euxassay_004916_22 euxassay_004916_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19539Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19539_wholemount_strong.wlz
19539_wholemount_moderate.wlz
19539_wholemount_weak.wlz
19539_wholemount_possible.wlz
19539_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19539_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
thymus primordium
moderate moderate
regionalmoderate expression: see section 09 10 11 12
submandibular gland primordium
moderate moderate
regionalmoderate expression: see section 06 07 15 16 17 18
thyroid gland
moderate moderate
regionalmoderate expression: see section 09
brain
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23
glossopharyngeal ix ganglion
strong strong
regionalstrong expression: see section 16 moderate expression: see section 06
trigeminal v ganglion
strong strong
regionalstrong expression: see section 04 05 06 07 08 16 17 18 19 20 21 moderate expression: see section 03
vestibulocochlear viii ganglion
moderate moderate
regionalmoderate expression: see section 06
spinal cord
moderate moderate
regionalmoderate expression: see section 05 06 07 08 09 10 11
cervico-thoracic ganglion
moderate moderate
regionalmoderate expression: see section 12 13 weak expression: see section 07
cervical ganglion
weak weak
regionalweak expression: see section 06 07 14 15
thoracic ganglion
moderate moderate
regionalmoderate expression: see section 09 10 11 weak expression: see section 08
dorsal root ganglion
moderate moderate
regionalmoderate expression: see section 05 06 07 08 09 13
retina
moderate moderate
regionalmoderate expression: see section 01 02 03 04 23
nasal cavity olfactory epithelium
strong strong
regionalstrong expression: see section 12 moderate expression: see section 09 10 11 13 15 16 17 18 19
nasal cavity respiratory epithelium
moderate moderate
regionalmoderate expression: see section 13 14 16 17 18
rectum
moderate moderate
regionalmoderate expression: see section 11 12
midgut
moderate moderate
regionalmoderate expression: see section 08 09 10 11 12 13 14 16 17 18 19 20 weak expression: see section 15
lower jaw incisor
moderate moderate
regionalmoderate expression: see section 11 12
lower jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 17 18 19
upper jaw incisor
moderate moderate
regionalmoderate expression: see section 11 12
upper jaw molar
moderate moderate
regionalmoderate expression: see section 07 08 17 18 19
bladder
moderate moderate
regionalmoderate expression: see section 12
metanephros
moderate moderate
regionalmoderate expression: see section 03 04 05 06 07 13 14 15 16
larynx
moderate moderate
regionalmoderate expression: see section 16
lung
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 17 18 19 20 21
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6934
Entity Detected:Agpat5, 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) ( MGI:1196345)
Sequence:sense strand is shown

>T6934
GAGAGGATGCTGCTGTCCCTGGTGCTCCACACGTACTCTATGCGCTACCTGCTCCCCAGCGTCCTGTTGC
TGGGCTCGGCGCCCACCTACCTGCTGGCCTGGACGCTGTGGCGGGTGCTCTCCGCGCTGATGCCCGCCCG
CCTGTACCAGCGCGTGGACGACCGGCTTTACTGCGTCTACCAGAACATGGTGCTCTTCTTCTTCGAGAAC
TACACCGGGGTCCAGATATTGCTATATGGAGATTTGCCAAAAAATAAAGAAAATGTAATATATCTAGCGA
ATCATCAAAGCACAGTTGACTGGATTGTTGCGGACATGCTGGCTGCCAGACAGGATGCCCTAGGACATGT
GCGCTACGTACTGAAAGACAAGTTAAAATGGCTTCCGCTGTATGGGTTCTACTTTGCTCAGCATGGAGGA
ATTTATGTAAAACGAAGTGCCAAATTTAATGATAAAGAAATGAGAAGCAAGCTGCAGAGCTATGTGAACG
CAGGAACACCAATGTATCTTGTGATTTTCCCAGAGGGAACAAGGTATAATGCAACATACACAAAACTCCT
TTCAGCCAGTCAGGCATTTGCTGCTCAGCGCGGCCTTGCAGTATTAAAACACGTACTGACACCAAGAATA
AAGGCCACTCACGTTGCTTTTGATTCTATGAAGAGTCATTTAGATGCAATTTATGATGTCACAGTGGTTT
ATGAAGGGAATGAGAAAGGTTCAGGAAAATACTCAAATCCACCATCCATGACTGAGTTTCTCTGCAAACA
GTGCCCAAAACTTCATATTCACTTTGATCGTATAGACAGAAATGAAGTTCCAGAGGAACAAGAACACATG
AAAAAGTGGCTTCATGAGCGCTTTGAGATAAAAGATAGGTTGCTCATAGAGTTCTATGATTCACCAGATC
CAGAAAGAAGAAACAAATTTCCTGGGAAAAGTGTTCATTCCAGACTAAGTGTGAAGAAGACTTTACCTTC
AGTGTTGATCTTGGGGAGTTTGACTGCTGTCATGCTGATGACGGAGTCCGGAAGGAAACTCTACATGGGC
ACCTGGTTGTATGGAACCCTCCTTGGCTGCCTGTGGTTTGTTATTAAAGCATAAGCAAGTAGCAGGCTGC
AGTCACAGTCTCTTATTGATGGCTACACGTTGTATCACATTGTTTCCTGAATTAAATAAGGAGTTTTCTT
GTTGTTGTTTTTTTGTTTTGTTTTGTTTTGTTCTGTTTTAAGCCTTGATGATTGAACACTGGATAAAGTA
GAGTTTGTGACCACAGCCAACATGCATTTGATTTGGGGCAAACACATGTGGCTTTTCAGGTGCTGGGGTT
GCTGGAGACATGGAAGCTAAGTGGAGTTTATGCTGTTTTTTTTTTTTTAATGTTTTCATGAATTAATGTC
CACTTGTAAAGATTATTGGATACTTTCTGTAATTCAGAAGGTTGTATTTTAACAATAGTTTGCAGTATGT
TTCGCTATATTGGTTATCTTCCATTTGACTACTTGGCAGCTCAGACTCTTAATACTAAAGTATTTTACAT
TTTGAAGCTATGTGATACTGGTTTTTTGTTGTTGTTGTTGTTAATTTCTGAAAGTCAATGAAAGACACTG
TAATGATGCGTTAAGATGTTCCAAGAAAAAGGTGAGAATTATTCATGGCAAAAAAGATCTGTCTAATGTA
TATTTTTATTATATTGCTCTATTTAGCTAATTTTCTTTATATTTGCAAAATAATGAACATTTTTAATATT
AAAATGCTTGATTTGCATACCCCCGATTCTACAGAGAATAATGTGTAAAGTGTCAGAATAGACTTGAAGC
TCTGCTGTGACTCAGTCTCCTTTGTCAGAGCTTCTAGTAGCCCAGCTACTGAGCTGCTTTGTTAGTACCT
CCAGCACCTGAGCCGTTAAGTACTTATAAATGCAAGGGACCCGTTATCTTCATATCGGAATAGACATGAA
CAGAGCTCTAAGGCGATGAAAGTCTGCCAGCATCCTCTCTGTCCTCGCACGTGCCTTCTGCCTGGCTCCA
TTTGCTTTGGCACTGCGTTCGATCTAGAGTGTAGGTGCTCACTGCTTATTTCAGCCCTGGCTCTGTGGTT
TTGTGTCCTCCAGTGGTGCTGTTCACTGTTGGGGTGCAGGTGGTGCTGCCCTGACTCAGAGGGGCAGCTC
CCTGGCTCCTGAGGGTGAGCCTTCTTGGCTACTACAGAAGTATTGTGCATTTGTTTATGGCAAGAACCAT
CAGGATTGGATAAATGTGTTATTTCTCTTTGATTTCCATGGAGCCACACTGTTGGTACATGTCCCCTGTG
AACAGAGCTACCTTTCAGGAGCACATCATACTGTCGTGAGTCACGGCACGGTGTGTCCTGTGAGAAGAGG
CTTTCTAACGTGTGATTTGCCGTGTTTCTATGTTGTGATTTAAGCGTGATTGCCTACTAGTCATTCAAGG
TAACATTTCTGCAAATTTCATACAGATTTTTTGTCACAAAATTACTATACCAATGATCTAGTTGAAATAG
ACCAATTGAATCACAATAAATAATTTTTTTTAATTGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3982362 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3982362 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19542 same embryo
 EMAGE:19538 same embryo
 EMAGE:19543 same embryo
 EMAGE:19541 same embryo
 EMAGE:19540 same embryo
 EurExpress:euxassay_004916 same experiment
 MGI:4823031 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS