WlzFeatures

Files
file	WlzArea.c
	Computes the area of an object.
file	WlzBoundingBox.c
	Functions for computing the axis aligned bounding box of objects.
file	WlzCCor.c
	Computes the cross correlation of two objects.
file	WlzCentrality.c
	Functions for computing the centrality of a feature domain with respect to a boundary domain. See WlzCentrality().
file	WlzCentreOfMass.c
	Computes the centre of mass of objects.
file	WlzDistMetric.c
	Functions to compute the Hausdorff distance, mean nearest neighbour and the median nearest neighbour distances between two datasets.
file	WlzGreyStats.c
	Calculates simple statistics about an object's grey values.
file	WlzGreyValueMixing_s.c
	Functions to mix the grey values of two woolz object and produce a new object using \[ o = (1 - x) o_1 + x o_2 \] .
file	WlzInteriority.c
	Functions to compute an interiority scores.
file	WlzLineArea.c
	Computes the line area of an object.
file	WlzNMSuppress.c
	A non-maximal supression filter, which constructs a new domain object using a Canny-like non-maximal suppression algorithm. The domain is the non-maximally suppressed domain and the values are the encoded gradient direction.
file	WlzNObjGreyStats.c
	Calculates statistics for grey values across the objects of the given compound object.
file	WlzOccupancy.c
	Functions for computing the occupancy of domains.
file	WlzOffsetDist.c
	Functions to compute offset distance objects.
file	WlzPoints.c
	Functions for handling point domains.
file	WlzRGBAGreyStats.c
	Calculates simple quick statistics for a domain object with RGBA values.
file	WlzSampleValuesAndCoords.c
	Extracts values and coordinates from a Woolz object with grey values using a sampoling function.
file	WlzScalarFeatures.c
	Functions for extracting scalar features from objects.
file	WlzTensor.c
	Functions which derive and manipulate tensor quantities.
file	WlzThinToPoints.c
	Functions for extracting point locations by thinnning.
file	WlzVerticies.c
	Functions for extracting vertices from objects represented by vertices, eg polylines, boundlists and contours.

Data Structures
struct	_WlzPoints
	An array of either 2D or 3D points which may have either integral of floating point values. Possible types are: WLZ_POINTS_2I, WLZ_POINTS_2D, WLZ_POINTS_3I and WLZ_POINTS_3D. Typedef: WlzPoints. More...
struct	_WlzRect
	An integer rectangle domain. Side from (l[0],k[0]) to (l[1],k[1]) is a long side. The vertices are cyclic. Typedef: WlzIRect. More...
struct	_WlzFRect
	A single precision floating point rectangle domain. Side from (l[0],k[0]) to (l[1],k[1]) is a long side. The vertices are cyclic. Typedef: WlzFRect. More...

Macros
#define	WLZ_DGTENSOR_FEATURE_MASK(F)   (((F)>0)?(1<<((F)-1)):(0))
	Bit mask generator for features of Jacobian deformation gradient tensors. More...

Enumerations
enum	_WlzScalarFeatureType {   WLZ_SCALARFEATURE_VALUE,   WLZ_SCALARFEATURE_GRADIENT }
	Scalar features of objects. More...
enum	_WlzDGTensorFeatureType {   WLZ_DGTENSOR_FEATURE_NONE = 0,   WLZ_DGTENSOR_FEATURE_DETJAC = 1,   WLZ_DGTENSOR_FEATURE_EIGENVEC = 2,   WLZ_DGTENSOR_FEATURE_EIGENVAL = 3,   WLZ_DGTENSOR_FEATURE_LIMIT = 4 }
	Features of Jacobian deformation gradient tensors. More...

Functions
WlzLong	WlzArea (WlzObject *obj, WlzErrorNum *dstErr)
	Computes the area of an object. More...
WlzIBox2	WlzBoundingBox2I (WlzObject *inObj, WlzErrorNum *dstErr)
	Computes the 2D integer axis aligned bounding box of the given object. More...
WlzDBox2	WlzBoundingBox2D (WlzObject *inObj, WlzErrorNum *dstErr)
	Computes the 2D double precision axis aligned bounding box of the given object. More...
WlzIBox3	WlzBoundingBox3I (WlzObject *inObj, WlzErrorNum *dstErr)
	Computes the integer 3D axis aligned bounding box of the given object. More...
WlzDBox3	WlzBoundingBox3D (WlzObject *inObj, WlzErrorNum *dstErr)
	Computes the double precision 3D axis aligned bounding box of the given object. More...
WlzDBox3	WlzBoundingBoxGModel3D (WlzGMModel *model, WlzErrorNum *dstErr)
	Computes the 3D axis aligned bounding box of the 3D geometric model. It is an error if the model is not a 3D model. More...
WlzDBox2	WlzBoundingBoxGModel2D (WlzGMModel *model, WlzErrorNum *dstErr)
	Computes the 2D axis aligned bounding box of the 2D geometric model. It is an error if the model is not a 2D model. More...
WlzIBox2	WlzBoundingBox2DTo2I (WlzDBox2 bBox2D)
	Converts a 2D double precision bounding box to an integer bounding box. There is no checking done for underflows or overflows. More...
WlzDBox2	WlzBoundingBox2ITo2D (WlzIBox2 bBox2I)
	Converts a 2D integer bounding box to an double precision bounding box. More...
WlzIBox3	WlzBoundingBox3DTo3I (WlzDBox3 bBox3D)
	Converts a 3D double precision bounding box to an integer bounding box. There is no checking done for underflows or overflows. More...
WlzDBox3	WlzBoundingBox3ITo3D (WlzIBox3 bBox3I)
	Converts a 3D integer bounding box to an double precision bounding box. More...
WlzFBox3	WlzBoundingBox3DTo3F (WlzDBox3 bBox3D)
	Converts a 3D double bounding box to a single precision bounding box. More...
WlzDBox3	WlzBoundingBox3FTo3D (WlzFBox3 bBox3F)
	Converts a 3D single bounding box to a double precision bounding box. More...
WlzIBox2	WlzBoundingBoxUnion2I (WlzIBox2 box0, WlzIBox2 box1)
	Computes the 2D integer bounding box which encloses the given pair of bounding boxes. More...
WlzFBox2	WlzBoundingBoxUnion2F (WlzFBox2 box0, WlzFBox2 box1)
	Computes the 2D single precision bounding box which encloses the given pair of bounding boxes. More...
WlzDBox2	WlzBoundingBoxUnion2D (WlzDBox2 box0, WlzDBox2 box1)
	Computes the 2D double precision bounding box which encloses the given pair of bounding boxes. More...
WlzIBox3	WlzBoundingBoxUnion3I (WlzIBox3 box0, WlzIBox3 box1)
	Computes the 3D integer bounding box which encloses the given pair of bounding boxes. More...
WlzFBox3	WlzBoundingBoxUnion3F (WlzFBox3 box0, WlzFBox3 box1)
	Computes the 3D single precision bounding box which encloses the given pair of bounding boxes. More...
WlzDBox3	WlzBoundingBoxUnion3D (WlzDBox3 box0, WlzDBox3 box1)
	Computes the 3D double precision bounding box which encloses the given pair of bounding boxes. More...
double	WlzCCorS2D (WlzObject *obj0, WlzObject *obj1, int unionFlg, int normFlg, WlzErrorNum *dstErr)
	Computes the cross correlation of the two given 2D spatial domain objects in the spatial domain. The algorithm used by this function is not an efficient unless a single cross correlation value is required. More...
double	WlzCentrality (WlzObject *fObj, WlzObject *bObj, int nRay, int binFlg, double *dstMaxR, WlzErrorNum *dstErr)
	Computes the centrality of a feature domain with respect to a boundary domain. The boundary domain must enclose the feature domain. More...
WlzDVertex2	WlzCentreOfMass2D (WlzObject *srcObj, int binObjFlag, double *dstMass, WlzErrorNum *dstErr)
	Calculates the centre of mass of a Woolz object. If the given object does not have grey values or the binary object flag is set (ie non zero) then every pixel or vertex within the object's domain has the same mass. More...
WlzDVertex3	WlzCentreOfMass3D (WlzObject *srcObj, int binObjFlag, double *dstMass, WlzErrorNum *dstErr)
	Calculates the centre of mass of a Woolz object. If the given object does not have grey values or the binary object flag is set (ie non zero) then every pixel or vertex within the objects domain has the same mass. More...
WlzDVertex2	WlzCentreOfMassVtx2D (int nVtx, WlzDVertex2 *vtx)
	Computes the centre of mass of a vector of 2D vertices. More...
WlzDVertex3	WlzCentreOfMassVtx3D (int nVtx, WlzDVertex3 *vtx)
	Computes the centre of mass of a vector of 3D vertices. More...
WlzErrorNum	WlzDistMetricGM (WlzGMModel *model0, WlzGMModel *model1, double *dstDistH, double *dstDistM, double *dstDistN, double *dstDistI)
	Computes any combination of the Hausdorff, mean nearest neighbour, median nearest neighbour and minimum nearest neighbour distances between the vertices of the given geometric models. See WlzDistMetricVertex2D() for details of the metrics. More...
WlzErrorNum	WlzDistMetricDirGM (WlzGMModel *model0, WlzGMModel *model1, double *dstDistH, double *dstDistM, double *dstDistN, double *dstDistI)
	Computes any combination of the directed Hausdorff, mean nearest neighbour, median nearest neighbour and minimum nearest neighbour distances between the vertices of the given geometric models. See WlzDistMetricDirVertex2D() for details of the metrics. More...
WlzErrorNum	WlzDistMetricVertex2D (int n0, WlzDVertex2 *vx0, int n1, WlzDVertex2 *vx1, double *dstDistH, double *dstDistM, double *dstDistN, double *dstDistI)
	Computes any combination of the Hausdorff, mean nearest neighbour, median nearest neighbour and minimum nearest neighbour distances between the given sets of vertices. Each of these distance measures is the maximum of the two possible directed measures: \[ D = \max{(d(A,B), d(B,A))} \] Where \(D\) is a non-directed distance metric and \(d\) is the associated directed distance metric. \(A\) and \(B\) are the two datasets. More...
WlzErrorNum	WlzDistMetricVertex3D (int n0, WlzDVertex3 *vx0, int n1, WlzDVertex3 *vx1, double *dstDistH, double *dstDistM, double *dstDistN, double *dstDistI)
	Computes any combination of the Hausdorff, mean nearest neighbour, median nearest neighbour and minimum nearest neighbour distances between the given sets of vertices. See WlzDistMetricVertex2D() for an explaination of the distance metrics. More...
WlzErrorNum	WlzDistMetricDirVertex2D (int n0, WlzDVertex2 *vx0, int n1, WlzDVertex2 *vx1, double *dstDistH, double *dstDistM, double *dstDistN, double *dstDistI)
	Computes any combination of the directed Hausdorff, mean nearest neighbour, median nearest neighbour and minimum mean neighbour distances between the given sets of vertices. The directed Hausdorff distance metric is: \[ \max_{a \in A}{\min_{b \in B}{\|a - b\|}} \] The directed mean nearest neighbour distance metric is: \[ \frac{1}{n_a} \sum_{a \in A}{\min_{b \in B}{\|a - b\|}} \] Likewise the directed median nearest neighbour distance metric is: \[ \mathrm{median}_{a \in A}{\min_{b \in B}{\|a - b\|}} \] Where \(A\) and \(B\) are the two datasets. More...
WlzErrorNum	WlzDistMetricDirVertex3D (int n0, WlzDVertex3 *vx0, int n1, WlzDVertex3 *vx1, double *dstDistH, double *dstDistM, double *dstDistN, double *dstDistI)
	Computes any combination of the directed Hausdorff, mean nearest neighbour, median nearest neighbour and minimum nearest neighbour distances between the given sets of vertices. See WlzDistMetricDirVertex2D() for an explaination of the distance metrics. More...
WlzDVertex3 *	WlzGeometryTrackUpAndDown_s (int numberOfPixelsZ, int startTrackingFile, int numberOfFilesDownOrUp, double disForInAndOutGuid, double disForInAndOut, unsigned char **TwoDImageFilesNameList, int numOf2DWlzFiles, int downOrUp, int sectionLength_N, int subSubSectionLength_L, int numberOfSampleP_k, char *surfacePointFileName, char *surfaceInPointFileName, char *surfaceOutPointFileName, int startShell, int endShell, int startSection, int endSection, double minDis, WlzErrorNum *dstErr)
	Track a curved path through a set of geometric model shells. More...
size_t	WlzGreySize (WlzGreyType gType)
	Given a grey type, computes the number of bytes required to to store a single grey value of that type. Note the grey type WLZ_GREY_BIT is able to store multiple values in a single byte but one byte is required to store a single bit. More...
int	WlzGreyStats (WlzObject *srcObj, WlzGreyType *dstGType, double *dstMin, double *dstMax, double *dstSum, double *dstSumSq, double *dstMean, double *dstStdDev, WlzErrorNum *dstErr)
	Calculates simple quick statistics for given 2D or 3D domain object with grey values. Pointers provided for results may be NULL without causing an error. More...
WlzObject *	WlzGreyValueMixing_s (WlzObject *sObj, WlzObject *tObj, double xmiddle, WlzErrorNum *dstErr)
	calculate the distance map of a woolz obj More...
double *	WlzInteriorityN (WlzObject *refObj, int nTstObj, WlzObject **tstObjs, WlzErrorNum *dstErr)
	Computes an interiority score for each test object with respect to the reference object. See WlzInteriority(). This function computes the distance transform for the reference domain once and then uses this for each of the test domains. If not NULL the returned array of scores should be freed using AlcFree(). More...
double	WlzInteriority (WlzObject *refObj, WlzObject *tstObj, WlzErrorNum *dstErr)
	Computes an interiority score for the test object with respect to the reference object. The interiority score is the mean distance of those elements of the intersection of the reference and test object from the boundary of the reference object, ie: \[ s = t \cap r b = t \neg t^- i = \frac{1}{|s|} \sum_{s}{D(b, s)} \] where \(t\) is a test object, \(t^-\) is the eroded test object, \(|x|\) is the cardinality of \(x\) and \(D\) is the distance operator. More...
int	WlzLineArea (WlzObject *obj, WlzErrorNum *dstErr)
	Calculate the line-area of an object defined as the sum of the line segments bounded by the left hand end of the first interval in a line and the right hand end of the last interval in that line. More...
WlzObject *	WlzMakeMarkers (WlzVertexType vType, int nVtx, WlzVertexP vtx, WlzMarkerType mType, int mSz, WlzErrorNum *dstErr)
	Constructs a domain from the union of marker domains with a marker domain at each of the given vertex positions. More...
WlzObject *	WlzMarkerLattice (WlzObject *gObj, WlzMarkerType mType, int mSz, int mSep, WlzErrorNum *dstErr)
	Creates a new domain object that is a formed from a lattice of markers covering the given domain. More...
WlzPoints *	WlzMakePoints (WlzObjectType type, int nVtx, WlzVertexP vtxP, int maxVtx, WlzErrorNum *dstErr)
	Creates a new point domain. A point domain consists of an array of vertices which are treated as seperate points. More...
WlzErrorNum	WlzNObjGreyStats (WlzObject *gObj, int mean, int stddev, int *dstN, WlzObject **dstMinObj, WlzObject **dstMaxObj, WlzObject **dstSumObj, WlzObject **dstSSqObj)
	Computes a collection of objects from the object (which should be a compound array object). The computed objects all have the intersection of the given object domains as their domain and WLZ_GREY_DOUBLE values for the minimum, maximum, sum and sum of squares of the given grey values at each pixel/voxel within the intersection domain. Returned objects will have name properties set to: min, max, sum, ssq, mean and stddev as appropriate. More...
WlzErrorNum	Wlz3DSectionOcc (WlzObject *obj, WlzThreeDViewStruct *vs, double sep, double *dstFirst, double *dstLast, int *dstArraySizeOcc, int **dstArrayOcc)
	Computes an array of integers which correspond to a line through the given object's domain perpendicular to the plane defined by the given view structure. At each point along the line the occupancy area or number of domains intersecting the plane is computed. When the given object is a 3D spatial domain object then areas are computed and when it is a compound array then the occupancy (number of domains) is computed. More...
WlzObject *	WlzDomainOccupancy (WlzObject *gObj, WlzErrorNum *dstErr)
	Computes a new Woolz domain object which has the domain of the given object (union of domains if the object is a compound array) and a value table with integer values representing the number of domains present. More...
WlzObject *	WlzOffsetDist (WlzObject *obj0, WlzObject *obj1, int maxDist, WlzErrorNum *dstErr)
	Computes an object with domain and values that are the set of minimum distances between the two given objects. An equidistant boundary is computed between the domains of the two given objects, within maxDist of each object's domain and within the convex hull of the union of the two given object's domains. This function will probably only be useful where one of the objects tends to track the other. More...
WlzObject *	WlzPointsToDomObj (WlzPoints *pnt, double scale, WlzErrorNum *dstErr)
	Creates a domain object which coresponds to the union of the given points. More...
WlzPoints *	WlzPointsFromDomObj (WlzObject *gvnObj, double dMin, int useFloatingPoint, int voxelScaling, int useGrey, double gMin, double gMax, double gGam, WlzErrorNum *dstErr)
	Finds points which are within the given opjects domain and are seperated by at least the given minimum distance. If the given object's grey values are used, then the probability of a point being placed is proportional to: \[ \left\{ \begin{array}{ll} 0.0 & g_i < g_{min} \\ frac{(g_i - g_{min})^\gamma}{g_{max} - g_{min}} & g_i > g_{min} \end{array} \right. \] . More...
WlzPointValues *	WlzPointValuesFromDomObj (WlzPoints *pdm, WlzObject *domObj, WlzErrorNum *dstErr)
	Creates a new point values using the given points domain and domain object with values. Values are sampled from the domain object using the locations of the points in the points domain. More...
WlzObject *	WlzPointsToMarkers (WlzPoints *pts, WlzMarkerType mType, int mSz, WlzErrorNum *dstErr)
	Constructs a domain from the union of marker domains with a marker domain at each of the given point positions. More...
WlzPoints *	WlzPointsDither (WlzPoints *gPts, WlzDVertex3 dSz, WlzObject *resObj, WlzErrorNum *dstErr)
	Dithers the vertices of the given points by adding a random displacement within the range -d to +d, where d is the given dither size. More...
int	WlzRGBAGreyStats (WlzObject *srcObj, WlzRGBAColorSpace colSpc, WlzGreyType *dstGType, double *dstMin, double *dstMax, double *dstSum, double *dstSumSq, double *dstMean, double *dstStdDev, WlzErrorNum *dstErr)
	Calculates simple quick statistics for the domain object with RGBA values. Each component has its statictics computed and entered into the four double[4] arrays. More...
WlzErrorNum	WlzSampleValuesAndCoords (WlzObject *obj, WlzGreyType *dstGType, int *dstNVal, WlzGreyP *dstValP, WlzVertexP *dstCoords, WlzSampleFn samFn, int samFac)
	Allocates buffers for both the grey values and the coordinates of the grey values in the given object. On return these buffers contain the sampled object values and the coordinates of the values. More...
WlzErrorNum	WlzScalarFeatures2D (WlzObject *obj, int *dstNFeat, WlzIVertex2 **dstFeat, WlzScalarFeatureType fType, WlzThresholdType thrHL, WlzPixelV thrV, double filterV, double minDist)
	Finds scalar features within the given object. Where the feature values are all either above or below the given threshold value, depending on the value of thrHL, and the features have the given minimum seperation distance. More...
WlzObject *	WlzDGTensorFeatures (WlzObject *mObj, unsigned int features, int points, double dMin, WlzDVertex3 dither, WlzDVertex3 smooth, int voxScaling, WlzErrorNum *dstErr)
	Computes features of a deformation gradient tensor field and creates a compound object, each element of which is a required feature of the given deformation gradient field object. The feature object may be either a points object or a spatial domain object as required. See WlzDGTensorSDFeature() which this function calls to compute the feature objects. More...
WlzObject *	WlzDGTensorSDFeature (WlzObject *mObj, WlzDomain fDom, WlzDGTensorFeatureType feat, WlzDVertex3 smooth, WlzErrorNum *dstErr)
	Computes a feature of a deformation gradient tensor field throughout the given 3D spatial domain. This function assumes all input parameters to be valid, when this is not certain use WlzDGTensorFeatures(). The returned object will have it's name property set to an appropriate name for the required feature: WLZ_DGTENSOR_FEATURE_DETJAC ("jacobian"), WLZ_DGTENSOR_FEATURE_EIGENVEC ("eigen vectors") or WLZ_DGTENSOR_FEATURE_EIGENVAL ("eigen values"). More...
WlzObject *	WlzDGTensorPDFeature (WlzObject *mObj, WlzDomain fDom, WlzDGTensorFeatureType feat, WlzErrorNum *dstErr)
	Computes a feature of a deformation gradient tensor field throughout the given 3D points domain. This function assumes all input parameters to be valid, when this is not certain use WlzDGTensorFeatures(). More...
WlzErrorNum	WlzTensorSmooth (WlzObject *obj, WlzDVertex3 smooth)
	Smooths the (possibly) non-scalar features of the given object in place by applying a Gaussian filter with the given sigma values (sigma value <~ 0.0 implies no filtering in the corresponding direction. More...
WlzObject *	WlzTensorGetComponent (WlzObject *tObj, int cpt, WlzErrorNum *dstErr)
	Extracts a single value component from a (possibly) non-scalar object and creates an object with a non-tiled value table which is returned. This function may also be used to convert a tiled value object to a non-tiled value object. More...
WlzErrorNum	WlzTensorSetComponent (WlzObject *tObj, WlzObject *fObj, int cpt)
	Sets a single value component in a (possibly) non-scalar object using scalar values of the second given object. More...
WlzObject *	WlzCMeshDGTensor (WlzObject *cObj, int invert, WlzErrorNum *dstErr)
	Given a conforming mesh transform this function computes the displacement gradient tensor for each of it's valid elements. Given displacement \(\vec{u}(\vec{r})\) with position vector \(\vec{r}\) which maps a point from a space \(\vec{x}\) to a space \(\vec{u}\) the displacement gradient tensor is defined in 3D as \[ { \newcommand{\pd}[2]{\frac{\partial #1}{\partial #2}} u_{i,j} = \left [ \begin{array}{ccc} \pd{u_0}{x_0} & \pd{u_0}{x_1} & \pd{u_0}{x_2} \\ \pd{u_1}{x_0} & \pd{u_1}{x_1} & \pd{u_1}{x_2} \\ \pd{u_2}{x_0} & \pd{u_2}{x_1} & \pd{u_2}{x_2} \end{array} \right] } \] with \[ \Delta r_i = u_{ij} r_j \] where \(\vec{u} = \left[u_0, u_1, u_2\right]^T\) and \(\Delta \vec{r} = \left[x_0, x_1, x_2\right]^T\). The displacement gradient tensor matrix is just the rotation and independent scaling part of the affine transform that displaces the element. More...
WlzObject *	WlzCMeshDGTensorAtPts (WlzObject *cObj, int invert, WlzDVertex3 sd, int dither, WlzErrorNum *dstErr)
	Given a conforming mesh transform this function computes the displacement gradient tensor at regular cartesian grid sample points throughout the mesh. The tensor values at the sample points are computed at each point by computing an iverse distance weighted least squares general affine transform for the ring of nodes surrounding the closest node. See WlzCMeshDGTensor() for the description of the tensor. More...
WlzObject *	WlzCMeshStrainTensor (WlzObject *cObj, int invert, WlzErrorNum *dstErr)
	Given a conforming mesh transform this function computes the strain tensor for each of it's valid elements. This function uses WlzCMeshDGTensor() to compute the displacement gradient tensor and the derives the strain tensor \(e_{ij}\) from this using: \[ e_{ij} = \frac{1}{2} (u_{ij} + u_{ji}) \] . More...
WlzObject *	WlzCMeshStrainTensorAtPts (WlzObject *cObj, int invert, WlzDVertex3 sd, int dither, WlzErrorNum *dstErr)
	Given a conforming mesh transform this function computes the displacement gradient tensor at regular cartesian grid sample points throughout the mesh. The tensor values at the sample points are computed using WlzCMeshDGTensorAtPts(). The strain tensor is then computed from the displacement gradient tensor as for WlzCMeshStrainTensor(). More...
WlzObject *	WlzThinToPoints (WlzObject *gObj, int gThin, int gStart, int gInc, WlzErrorNum *dstErr)
	Extracts a points object in which the points are the centres of thinned regions of the input domain object. If the object has grey values and gThin is set then the object is erroded by successive thresholding while collecting all disconnected regions or if the object has no values the object is simply labeled to give a collection of disconnected regions. The disconnected regions are then eroded (morphologicaly) again collecting disconnected regions. More...
WlzVertexP	WlzVerticesFromObj (WlzObject *obj, WlzVertexP *dstNr, int *dstCnt, WlzVertexType *dstType, WlzErrorNum *dstErr)
	Allocates a buffer which it fills with the vertices from the given object. If the object is not one of the types that is represented by vertices, eg polylines, boundlists, contours ..., then this may result in a very large number of vertices, with for example one per voxel. Normals will only be allocated and set for objects represented by vertices, eg there will be no normals for voxel based objects. More...
WlzVertexP	WlzVerticesFromObjBnd (WlzObject *obj, int *dstCnt, WlzVertexType *dstType, WlzErrorNum *dstErr)
	Extracts all vertices that lie on the boundary of the given objects domain. More...
WlzErrorNum	WlzVerticesFromObjBnd2I (WlzObject *obj, int *dstNVtx, WlzIVertex2 **dstVtx)
	Extracts all vertices that lie on the boundary of the given 2D domain object's domain. More...
WlzErrorNum	WlzVerticesFromObjBnd3I (WlzObject *obj, int *dstNVtx, WlzIVertex3 **dstVtx)
	Extracts all vertices that lie on the boundary of the given 3D domain object's domain. More...
WlzErrorNum	WlzVerticesFromObj2I (WlzObject *obj, int *dstNVtx, WlzIVertex2 **dstVtx)
	Extracts all vertices that lie within the given 2D domain object's domain. More...
WlzErrorNum	WlzVerticesFromObj3I (WlzObject *obj, int *dstNVtx, WlzIVertex3 **dstVtx)
	Extracts all vertices that lie within the given 3D domain object's domain. More...
WlzVertexP	WlzVerticesFromGM (WlzGMModel *model, WlzVertexP *dstNr, int **dstVId, int *dstCnt, WlzVertexType *dstType, WlzErrorNum *dstErr)
	Allocates a buffer which it fills with the vertices from a geometric model. More...
WlzVertexP	WlzDVerticesFromGM (WlzGMModel *model, int *dstCnt, WlzVertexType *dstType, WlzErrorNum *dstErr)
	Allocates a buffer which it fills with either 2D or 3D double precission vertices from the geometric model. The indicies of the vertices in the buffer are the same as the indices of the vertices in the model. More...
WlzVertexP	WlzDVerticesFromCMesh (WlzCMeshP mesh, int *dstCnt, WlzVertexType *dstType, int skip, WlzErrorNum *dstErr)
	Allocates a buffer which it fills with either 2D or 3D double precission vertices from the conforming mesh. The indicies of the vertices in the buffer are the same as the indices of the vertices in the model unless the skip non-valid nodes flag is set.. More...
int	WlzVertexQSortFnI2 (void *p0, void *p1)
	Function for AlgSort() to sort WlzIVertex2 vertices so that they have increasing Y then X. More...
int	WlzVertexQSortFnI3 (void *p0, void *p1)
	Function for AlgSort() to sort WlzIVertex3 vertices so that they have increasing z then Y then X. More...
int	WlzVertexHeapSortIdxFnI2 (void *data, int *idx, int id0, int id1)
	Function for AlgHeapSortIdx() to sort WlzIVertex2 vertices so that they have increasing Y then X. More...
int	WlzVertexHeapSortIdxFnI3 (void *data, int *idx, int id0, int id1)
	Function for AlgHeapSortIdx() to sort WlzIVertex3 vertices so that they have increasing Z then Y then X. More...
int	WlzVertexHeapSortIdxFnD2 (void *data, int *idx, int id0, int id1)
	Function for AlgHeapSortIdx() to sort WlzDVertex2 vertices so that they have increasing Z then Y then X. More...
int	WlzVertexHeapSortIdxFnD3 (void *data, int *idx, int id0, int id1)
	Function for AlgHeapSortIdx() to sort WlzDVertex3 vertices so that they have increasing Z then Y then X. More...
AlcKDTTree *	WlzVerticesBuildTree (WlzVertexType vType, int nV, WlzVertexP vtx, int *shfBuf, WlzErrorNum *dstErr)
	Allocates and populates a k-D tree from the given vertices. The vertices are either WlzDVertex2 orWlzDVertex3. More...

Detailed Description

Macro Definition Documentation

#define WLZ_DGTENSOR_FEATURE_MASK

(

F

)

(((F)>0)?(1<<((F)-1)):(0))

Bit mask generator for features of Jacobian deformation gradient tensors.

Referenced by WlzDGTensorFeatures().

Enumeration Type Documentation

enum _WlzScalarFeatureType

Scalar features of objects.

Enumerator
WLZ_SCALARFEATURE_VALUE	Grey value.
WLZ_SCALARFEATURE_GRADIENT	Gradient of grey values.

enum _WlzDGTensorFeatureType

Features of Jacobian deformation gradient tensors.

Enumerator
WLZ_DGTENSOR_FEATURE_NONE	No feature, null case.
WLZ_DGTENSOR_FEATURE_DETJAC	Determinant of Jacobian tensor.
WLZ_DGTENSOR_FEATURE_EIGENVEC	Eigen vectors.
WLZ_DGTENSOR_FEATURE_EIGENVAL	Eigen values.
WLZ_DGTENSOR_FEATURE_LIMIT	Not a feature but used to itterate through the features, keep it the largest value.

Function Documentation

WlzLong WlzArea	(	WlzObject *	obj,
		WlzErrorNum *	dstErr
	)

Computes the area of an object.

Returns

Area of object or a negative value on error.

Todo:

Implement for objects other than 2D domain objects.

Parameters

obj	Input object.
dstErr	Destination error pointer, may be NULL.

References _WlzIntervalWSpace::colrmn, _WlzDomain::core, _WlzObject::domain, _WlzObject::type, WLZ_2D_DOMAINOBJ, WLZ_EMPTY_OBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_EOO, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_RASTERDIR_ILIC, WlzInitRasterScan(), and WlzNextInterval().

Referenced by Wlz3DSectionOcc(), Wlz3DViewTransformObj(), WlzCCorS2D(), WlzGreySetHilbertRankValues(), WlzMakeIntervalValues(), WlzSampleValuesAndCoords(), WlzSplitMontageObj(), WlzSplitObj(), WlzVerticesFromObj2I(), and WlzVolume().

WlzIBox2 WlzBoundingBox2I	(	WlzObject *	inObj,
		WlzErrorNum *	dstErr
	)

Computes the 2D integer axis aligned bounding box of the given object.

Returns

2D integer bounding box.

Parameters

inObj	The given object.
dstErr	Destination error pointer, may be NULL.

References WLZ_ERR_NONE, WlzBoundingBox3I(), _WlzIBox2::xMax, _WlzIBox3::xMax, _WlzIBox2::xMin, _WlzIBox3::xMin, _WlzIBox2::yMax, _WlzIBox3::yMax, _WlzIBox2::yMin, and _WlzIBox3::yMin.

Referenced by WlzAffineTransformIsTranslate(), WlzAutoCor(), WlzContourFromPoints(), WlzContourGrdObj2D(), WlzFourierTransformObj(), WlzImageBlendObjToBufRGBA(), WlzMeshFromObjBox(), WlzRegCCorObjs(), WlzSepFilter(), WlzSplitMontageObj(), WlzSplitObj(), and WlzToArray1D().

WlzDBox2 WlzBoundingBox2D	(	WlzObject *	inObj,
		WlzErrorNum *	dstErr
	)

Computes the 2D double precision axis aligned bounding box of the given object.

Returns

2D double precision bounding box.

Parameters

inObj	The given object.
dstErr	Destination error pointer, may be NULL.

References WLZ_ERR_NONE, WlzBoundingBox3D(), _WlzDBox2::xMax, _WlzDBox3::xMax, _WlzDBox2::xMin, _WlzDBox3::xMin, _WlzDBox2::yMax, _WlzDBox3::yMax, _WlzDBox2::yMin, and _WlzDBox3::yMin.

WlzIBox3 WlzBoundingBox3I	(	WlzObject *	inObj,
		WlzErrorNum *	dstErr
	)

Computes the integer 3D axis aligned bounding box of the given object.

Returns

3D integer bounding box.

Parameters

inObj	The given object.
dstErr	Destination error pointer, may be NULL.

References _WlzDomain::b, _WlzValues::core, _WlzDomain::core, _WlzDomain::ctr, _WlzObject::domain, _WlzDomain::i, _WlzIntervalDomain::kol1, _WlzPlaneDomain::kol1, _WlzIntervalDomain::lastkl, _WlzPlaneDomain::lastkl, _WlzIntervalDomain::lastln, _WlzPlaneDomain::lastln, _WlzPlaneDomain::lastpl, _WlzIntervalDomain::line1, _WlzPlaneDomain::line1, _WlzValues::obj, _WlzDomain::p, _WlzPlaneDomain::plane1, _WlzDomain::poly, _WlzDomain::t, _WlzObject::type, _WlzCoreDomain::type, _WlzObject::values, WLZ_2D_DOMAINOBJ, WLZ_2D_POLYGON, WLZ_3D_DOMAINOBJ, WLZ_3D_POLYGON, WLZ_3D_WARP_TRANS, WLZ_AFFINE_TRANS, WLZ_BOUNDLIST, WLZ_COMPOUND_ARR_1, WLZ_COMPOUND_ARR_2, WLZ_COMPOUND_LIST_1, WLZ_COMPOUND_LIST_2, WLZ_CONTOUR, WLZ_CONV_HULL, WLZ_CONVOLVE_FLOAT, WLZ_CONVOLVE_INT, WLZ_EMPTY_OBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_NULL, WLZ_FMATCHOBJ, WLZ_HISTOGRAM, WLZ_INTERVALDOMAIN_INTVL, WLZ_INTERVALDOMAIN_RECT, WLZ_PLANEDOMAIN_DOMAIN, WLZ_PROPERTY_OBJ, WLZ_RECTANGLE, WLZ_TEXT, WLZ_TRANS_OBJ, WLZ_TRANSFORM_2D_AFFINE, WLZ_WARP_TRANS, WlzBoundingBox3DTo3I(), _WlzIBox3::xMax, _WlzIBox3::xMin, _WlzIBox3::yMax, _WlzIBox3::yMin, _WlzIBox3::zMax, and _WlzIBox3::zMin.

Referenced by WlzAffineTransformGMShell(), WlzAffineTransformIsTranslate(), WlzBoundingBox2I(), WlzCompoundToRGBA(), WlzContourFromPoints(), WlzContourGrdObj2D(), WlzContourRBFBndObj3D(), WlzDomainFill3D(), WlzEffWriteObjAm(), WlzEffWriteObjNrrd(), WlzFourierTransformObj(), WlzGreyValueMixing_s(), WlzRasterObj(), WlzSepFilter(), WlzSplitMontageObj(), and WlzSplitObj().

WlzDBox3 WlzBoundingBox3D	(	WlzObject *	inObj,
		WlzErrorNum *	dstErr
	)

Computes the double precision 3D axis aligned bounding box of the given object.

Returns

3D double precision bounding box.

Parameters

inObj	The given object.
dstErr	Destination error pointer, may be NULL.

References _WlzDomain::b, _WlzCMesh2D::bBox, _WlzCMesh2D5::bBox, _WlzCMesh3D::bBox, _WlzDomain::cm2, _WlzDomain::cm2d5, _WlzDomain::cm3, _WlzValues::core, _WlzDomain::core, _WlzDomain::ctr, _WlzObject::domain, _WlzDomain::i, _WlzIntervalDomain::kol1, _WlzPlaneDomain::kol1, _WlzIntervalDomain::lastkl, _WlzPlaneDomain::lastkl, _WlzIntervalDomain::lastln, _WlzPlaneDomain::lastln, _WlzPlaneDomain::lastpl, _WlzIntervalDomain::line1, _WlzPlaneDomain::line1, _WlzValues::obj, _WlzDomain::p, _WlzPlaneDomain::plane1, _WlzDomain::poly, _WlzDomain::t, _WlzObject::type, _WlzCoreDomain::type, _WlzObject::values, WLZ_2D_DOMAINOBJ, WLZ_2D_POLYGON, WLZ_3D_DOMAINOBJ, WLZ_3D_POLYGON, WLZ_3D_WARP_TRANS, WLZ_AFFINE_TRANS, WLZ_BOUNDLIST, WLZ_CMESH_2D, WLZ_CMESH_2D5, WLZ_CMESH_3D, WLZ_COMPOUND_ARR_1, WLZ_COMPOUND_ARR_2, WLZ_COMPOUND_LIST_1, WLZ_COMPOUND_LIST_2, WLZ_CONTOUR, WLZ_CONV_HULL, WLZ_CONVOLVE_FLOAT, WLZ_CONVOLVE_INT, WLZ_EMPTY_OBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_NULL, WLZ_FMATCHOBJ, WLZ_HISTOGRAM, WLZ_INTERVALDOMAIN_INTVL, WLZ_INTERVALDOMAIN_RECT, WLZ_PLANEDOMAIN_DOMAIN, WLZ_PROPERTY_OBJ, WLZ_RECTANGLE, WLZ_TEXT, WLZ_TRANS_OBJ, WLZ_TRANSFORM_2D_AFFINE, WLZ_WARP_TRANS, WlzCMeshUpdateBBox2D(), WlzCMeshUpdateBBox2D5(), WlzCMeshUpdateBBox3D(), _WlzDBox2::xMax, _WlzDBox3::xMax, _WlzDBox2::xMin, _WlzDBox3::xMin, _WlzDBox2::yMax, _WlzDBox3::yMax, _WlzDBox2::yMin, _WlzDBox3::yMin, _WlzDBox3::zMax, and _WlzDBox3::zMin.

Referenced by WlzBoundingBox2D(), and WlzBoundingBoxVtx3I().

WlzDBox3 WlzBoundingBoxGModel3D	(	WlzGMModel *	model,
		WlzErrorNum *	dstErr
	)

Computes the 3D axis aligned bounding box of the 3D geometric model. It is an error if the model is not a 3D model.

Returns

3D bounding box.

Parameters

model	Given model.
dstErr	Destination error pointer, may be NULL.

References _WlzGMModel::child, _WlzGMShell::idx, _WlzGMShell::next, _WlzGMModel::type, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_GMMOD_3D, WLZ_GMMOD_3I, WLZ_GMMOD_3N, WlzGMShellGetGBB3D(), _WlzDBox3::xMax, _WlzDBox3::xMin, _WlzDBox3::yMax, _WlzDBox3::yMin, _WlzDBox3::zMax, and _WlzDBox3::zMin.

Referenced by WlzBoundingBoxVtx3I(), and WlzGeoModelGridWSpSet3D().

WlzDBox2 WlzBoundingBoxGModel2D	(	WlzGMModel *	model,
		WlzErrorNum *	dstErr
	)

Computes the 2D axis aligned bounding box of the 2D geometric model. It is an error if the model is not a 2D model.

Returns

2D bounding box.

Parameters

model	Given model.
dstErr	Destination error pointer, may be NULL.

References _WlzGMModel::child, _WlzGMShell::idx, _WlzGMShell::next, _WlzGMModel::type, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_GMMOD_2D, WLZ_GMMOD_2I, WLZ_GMMOD_2N, WlzGMShellGetGBB2D(), _WlzDBox2::xMax, _WlzDBox2::xMin, _WlzDBox2::yMax, and _WlzDBox2::yMin.

WlzIBox2 WlzBoundingBox2DTo2I

(

WlzDBox2

bBox2D

)

Converts a 2D double precision bounding box to an integer bounding box. There is no checking done for underflows or overflows.

Returns

Integer bounding box.

Parameters

bBox2D

Double precision bounding box.

References _WlzIBox2::xMax, _WlzDBox2::xMax, _WlzIBox2::xMin, _WlzDBox2::xMin, _WlzIBox2::yMax, _WlzDBox2::yMax, _WlzIBox2::yMin, and _WlzDBox2::yMin.

WlzDBox2 WlzBoundingBox2ITo2D

(

WlzIBox2

bBox2I

)

Converts a 2D integer bounding box to an double precision bounding box.

Returns

Double precision bounding box.

Parameters

bBox2I

Double precision bounding box.

References _WlzIBox2::xMax, _WlzDBox2::xMax, _WlzIBox2::xMin, _WlzDBox2::xMin, _WlzIBox2::yMax, _WlzDBox2::yMax, _WlzIBox2::yMin, and _WlzDBox2::yMin.

WlzIBox3 WlzBoundingBox3DTo3I

(

WlzDBox3

bBox3D

)

Converts a 3D double precision bounding box to an integer bounding box. There is no checking done for underflows or overflows.

Returns

Integer bounding box.

Parameters

bBox3D

Double precision bounding box.

References _WlzIBox3::xMax, _WlzDBox3::xMax, _WlzIBox3::xMin, _WlzDBox3::xMin, _WlzIBox3::yMax, _WlzDBox3::yMax, _WlzIBox3::yMin, _WlzDBox3::yMin, _WlzIBox3::zMax, _WlzDBox3::zMax, _WlzIBox3::zMin, and _WlzDBox3::zMin.

Referenced by WlzBoundingBox3I().

WlzDBox3 WlzBoundingBox3ITo3D

(

WlzIBox3

bBox3I

)

Converts a 3D integer bounding box to an double precision bounding box.

Returns

Double precision bounding box.

Parameters

bBox3I

Integer bounding box.

References _WlzIBox3::xMax, _WlzDBox3::xMax, _WlzIBox3::xMin, _WlzDBox3::xMin, _WlzIBox3::yMax, _WlzDBox3::yMax, _WlzIBox3::yMin, _WlzDBox3::yMin, _WlzIBox3::zMax, _WlzDBox3::zMax, _WlzIBox3::zMin, and _WlzDBox3::zMin.

WlzFBox3 WlzBoundingBox3DTo3F

(

WlzDBox3

bBox3D

)

Converts a 3D double bounding box to a single precision bounding box.

Returns

Single precision bounding box.

Parameters

bBox3D

Double precision bounding box.

References _WlzDBox3::xMax, _WlzFBox3::xMax, _WlzDBox3::xMin, _WlzFBox3::xMin, _WlzDBox3::yMax, _WlzFBox3::yMax, _WlzDBox3::yMin, _WlzFBox3::yMin, _WlzDBox3::zMax, _WlzFBox3::zMax, _WlzDBox3::zMin, and _WlzFBox3::zMin.

WlzDBox3 WlzBoundingBox3FTo3D

(

WlzFBox3

bBox3F

)

Converts a 3D single bounding box to a double precision bounding box.

Returns

Double precision bounding box.

Parameters

bBox3F

Single precision bounding box.

References _WlzDBox3::xMax, _WlzFBox3::xMax, _WlzDBox3::xMin, _WlzFBox3::xMin, _WlzDBox3::yMax, _WlzFBox3::yMax, _WlzDBox3::yMin, _WlzFBox3::yMin, _WlzDBox3::zMax, _WlzFBox3::zMax, _WlzDBox3::zMin, and _WlzFBox3::zMin.

WlzIBox2 WlzBoundingBoxUnion2I	(	WlzIBox2	box0,
		WlzIBox2	box1
	)

Computes the 2D integer bounding box which encloses the given pair of bounding boxes.

Returns

Axis alligned 2D integer bounding box.

Parameters

box0	First bounding box.
box1	Second bounding box.

References _WlzIBox2::xMax, _WlzIBox2::xMin, _WlzIBox2::yMax, and _WlzIBox2::yMin.

Referenced by WlzImageBlendObjToBufRGBA().

WlzFBox2 WlzBoundingBoxUnion2F	(	WlzFBox2	box0,
		WlzFBox2	box1
	)

Computes the 2D single precision bounding box which encloses the given pair of bounding boxes.

Returns

Axis alligned 2D single precision bounding box.

Parameters

box0	First bounding box.
box1	Second bounding box.

References _WlzFBox2::xMax, _WlzFBox2::xMin, _WlzFBox2::yMax, and _WlzFBox2::yMin.

WlzDBox2 WlzBoundingBoxUnion2D	(	WlzDBox2	box0,
		WlzDBox2	box1
	)

Computes the 2D double precision bounding box which encloses the given pair of bounding boxes.

Returns

Axis alligned 2D double precision bounding box.

Parameters

box0	First bounding box.
box1	Second bounding box.

References _WlzDBox2::xMax, _WlzDBox2::xMin, _WlzDBox2::yMax, and _WlzDBox2::yMin.

WlzIBox3 WlzBoundingBoxUnion3I	(	WlzIBox3	box0,
		WlzIBox3	box1
	)

Computes the 3D integer bounding box which encloses the given pair of bounding boxes.

Returns

Axis alligned 3D integer bounding box.

Parameters

box0	First bounding box.
box1	Second bounding box.

References _WlzIBox3::xMax, _WlzIBox3::xMin, _WlzIBox3::yMax, _WlzIBox3::yMin, _WlzIBox3::zMax, and _WlzIBox3::zMin.

WlzFBox3 WlzBoundingBoxUnion3F	(	WlzFBox3	box0,
		WlzFBox3	box1
	)

Computes the 3D single precision bounding box which encloses the given pair of bounding boxes.

Returns

Axis alligned 3D float precision bounding box.

Parameters

box0	First bounding box.
box1	Second bounding box.

References _WlzFBox3::xMax, _WlzFBox3::xMin, _WlzFBox3::yMax, _WlzFBox3::yMin, _WlzFBox3::zMax, and _WlzFBox3::zMin.

WlzDBox3 WlzBoundingBoxUnion3D	(	WlzDBox3	box0,
		WlzDBox3	box1
	)

Computes the 3D double precision bounding box which encloses the given pair of bounding boxes.

Returns

Axis alligned 3D double precision bounding box.

Parameters

box0	First bounding box.
box1	Second bounding box.

References _WlzDBox3::xMax, _WlzDBox3::xMin, _WlzDBox3::yMax, _WlzDBox3::yMin, _WlzDBox3::zMax, and _WlzDBox3::zMin.

Referenced by WlzBoundingBoxVtx3I().

double WlzCCorS2D	(	WlzObject *	obj0,
		WlzObject *	obj1,
		int	unionFlg,
		int	normFlg,
		WlzErrorNum *	dstErr
	)

Computes the cross correlation of the two given 2D spatial domain objects in the spatial domain. The algorithm used by this function is not an efficient unless a single cross correlation value is required.

Returns

Cross correlation value.

Parameters

obj0	First object. Must have been assigned.
obj1	Second object. Must have been assigned.
unionFlg	Computes the cross correlation value in the union of the two objects domains if non zero. The default is to use the intersection of the domains.
normFlg	Normalise the cross-correlation value by dividing it by the area/volume over which it is computed if this flag is non-zero.
dstErr	Destination error pointer, may be NULL.

References _WlzValues::core, _WlzDomain::core, _WlzObject::domain, _WlzGreyValueWSpace::gType, _WlzGreyValueWSpace::gVal, _WlzIntervalWSpace::lftpos, _WlzIntervalWSpace::linpos, _WlzIntervalWSpace::rgtpos, _WlzObject::type, _WlzObject::values, _WlzIVertex2::vtX, _WlzIVertex2::vtY, WLZ_2D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_EOO, WLZ_ERR_GREY_TYPE, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_NULL, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_RASTERDIR_ILIC, WlzArea(), WlzFreeObj(), WlzGreyValueFreeWSp(), WlzGreyValueGet(), WlzGreyValueMakeWSp(), WlzInitRasterScan(), WlzIntersect2(), WlzNextInterval(), and WlzUnion2().

double WlzCentrality	(	WlzObject *	fObj,
		WlzObject *	bObj,
		int	nRay,
		int	binFlg,
		double *	dstMaxR,
		WlzErrorNum *	dstErr
	)

Computes the centrality of a feature domain with respect to a boundary domain. The boundary domain must enclose the feature domain.

Returns

Centrality feature value in range [0.0-1.0].

            Rays are projected from the centre of mass of the boundary
            domain to it's boundary. The maximum value of this distance
            for a given angle \form#99 being \form#100. At each point
            in the feature domain intersected by the ray the currrent
            value of the centrality is updated. The distance from the
            centre of mass to each feature point is defined to be

\(r_{i,j}\) and the mass at this point \(m_{i,j}\). The centrality of the feature domain \(\Omega_f\) with respect to the border domain \(Omega_b\) is defined to be

\[ c = \frac{\sum_{i,j}{m_{i,j}(R_i - r_{i,j})}} {\sum_{i,j}{m_{i,j}R}} \]

Parameters

fObj	Feature domain object, \(Omega_f\).
bObj	Boundary domain object, \(Omega_b\).
nRay	Number of equally spaced rays projected from the centre of mass.
binFlg	Treat as binary object if non-zero, with all masses having value 1.0.
dstMaxR	Destination pointer for maximum boundary radius, may be NULL.
dstErr	Destination error pointer, may be NULL.

References AlcFree(), AlcMalloc(), ALG_M_PI, _WlzDomain::b, _WlzValues::core, _WlzDomain::core, _WlzVertexP::d2, _WlzGreyP::dbp, _WlzObject::domain, _WlzBoundList::down, _WlzVertexP::f2, _WlzGreyP::flp, _WlzVertexP::i2, _WlzGreyP::inp, _WlzIntervalWSpace::lftpos, _WlzIntervalWSpace::linpos, _WlzBoundList::next, _WlzPolygonDomain::nvertices, _WlzGreyWSpace::pixeltype, _WlzBoundList::poly, _WlzIntervalWSpace::rgtpos, _WlzGreyP::shp, _WlzObject::type, _WlzPolygonDomain::type, _WlzGreyWSpace::u_grintptr, _WlzGreyP::ubp, _WlzObject::values, _WlzIVertex2::vtX, _WlzFVertex2::vtX, _WlzDVertex2::vtX, _WlzPolygonDomain::vtx, _WlzIVertex2::vtY, _WlzFVertex2::vtY, _WlzDVertex2::vtY, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_EOO, WLZ_ERR_GREY_TYPE, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_UNIMPLEMENTED, WLZ_ERR_VALUES_NULL, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_POLYGON_DOUBLE, WLZ_POLYGON_FLOAT, WLZ_POLYGON_INT, WLZ_RASTERDIR_ILIC, WlzBoundTo8Bound(), WlzCentreOfMass2D(), WlzEndGreyScan(), WlzFreeObj(), WlzGeomPolar2D(), WlzInitGreyScan(), WlzInitRasterScan(), WlzNextGreyInterval(), WlzNextInterval(), and WlzObjToBoundary().

WlzDVertex2 WlzCentreOfMass2D	(	WlzObject *	srcObj,
		int	binObjFlag,
		double *	dstMass,
		WlzErrorNum *	dstErr
	)

Calculates the centre of mass of a Woolz object. If the given object does not have grey values or the binary object flag is set (ie non zero) then every pixel or vertex within the object's domain has the same mass.

Returns

Coordinates of center of mass.

Parameters

srcObj	Given object.
binObjFlag	Binary object flag.
dstMass	Destination pointer for mass, may be NULL if not required.
dstErr	Destination pointer for error, may be NULL.

References _WlzObject::domain, _WlzValues::obj, _WlzDomain::t, _WlzObject::type, _WlzObject::values, _WlzDVertex2::vtX, _WlzDVertex2::vtY, WLZ_2D_DOMAINOBJ, WLZ_CONTOUR, WLZ_DBG, WLZ_DBG_LVL_1, WLZ_DBG_LVL_2, WLZ_DBG_LVL_FN, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, and WLZ_TRANS_OBJ.

Referenced by WlzCentrality(), WlzCentreOfMassVtx3D(), and WlzThinToPoints().

WlzDVertex3 WlzCentreOfMass3D	(	WlzObject *	srcObj,
		int	binObjFlag,
		double *	dstMass,
		WlzErrorNum *	dstErr
	)

Calculates the centre of mass of a Woolz object. If the given object does not have grey values or the binary object flag is set (ie non zero) then every pixel or vertex within the objects domain has the same mass.

Returns

Coordinates of center of mass.

Parameters

srcObj	Given object.
binObjFlag	Binary object flag.
dstMass	Destination pointer for mass, may be NULL if not required.
dstErr	Destination pointer for error, may be NULL.

References _WlzObject::domain, _WlzValues::obj, _WlzDomain::t, _WlzObject::type, _WlzObject::values, _WlzDVertex2::vtX, _WlzDVertex3::vtX, _WlzDVertex2::vtY, _WlzDVertex3::vtY, _WlzDVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_CONTOUR, WLZ_DBG, WLZ_DBG_LVL_1, WLZ_DBG_LVL_2, WLZ_DBG_LVL_FN, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, and WLZ_TRANS_OBJ.

Referenced by WlzCentreOfMassVtx3D(), and WlzThinToPoints().

WlzDVertex2 WlzCentreOfMassVtx2D	(	int	nVtx,
		WlzDVertex2 *	vtx
	)

Computes the centre of mass of a vector of 2D vertices.

Returns

Coordinates of centre of mass.

Parameters

nVtx	Number of vertices.
vtx	The vertices.

References WLZ_VTX_2_ADD, WLZ_VTX_2_SCALE, and WLZ_VTX_2_ZERO.

WlzDVertex3 WlzCentreOfMassVtx3D	(	int	nVtx,
		WlzDVertex3 *	vtx
	)

Computes the centre of mass of a vector of 3D vertices.

Returns

Coordinates of centre of mass.

Parameters

nVtx	Number of vertices.
vtx	The vertices.

References AlcVectorItemGet(), _WlzValues::core, _WlzDomain::core, _WlzDomain::ctr, _WlzGreyP::dbp, _WlzObject::domain, _WlzPlaneDomain::domains, _WlzGreyP::flp, _WlzGMVertex::idx, _WlzGreyP::inp, _WlzPlaneDomain::lastpl, _WlzIntervalWSpace::lftpos, _WlzIntervalWSpace::linpos, _WlzContour::model, _WlzGMResource::numIdx, _WlzDomain::p, _WlzGreyWSpace::pixeltype, _WlzPlaneDomain::plane1, _WlzGMModel::res, _WlzGreyP::rgbp, _WlzIntervalWSpace::rgtpos, _WlzGreyP::shp, _WlzGMModel::type, _WlzContour::type, _WlzCoreDomain::type, _WlzCoreValues::type, _WlzGreyWSpace::u_grintptr, _WlzGreyP::ubp, _WlzObject::values, _WlzVoxelValues::values, _WlzGMResource::vec, _WlzGMModelR::vertex, _WlzValues::vox, _WlzIVertex2::vtX, _WlzDVertex2::vtX, _WlzDVertex3::vtX, _WlzIVertex2::vtY, _WlzDVertex2::vtY, _WlzDVertex3::vtY, _WlzDVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_CONTOUR, WLZ_EMPTY_OBJ, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_EOO, WLZ_ERR_GREY_TYPE, WLZ_ERR_NONE, WLZ_ERR_TRANSFORM_TYPE, WLZ_ERR_VOXELVALUES_TYPE, WLZ_GMMOD_2D, WLZ_GMMOD_2I, WLZ_GMMOD_2N, WLZ_GMMOD_3D, WLZ_GMMOD_3I, WLZ_GMMOD_3N, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_RGBA, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_INTERVALDOMAIN_INTVL, WLZ_INTERVALDOMAIN_RECT, WLZ_PLANEDOMAIN_DOMAIN, WLZ_RASTERDIR_ILIC, WLZ_RGBA_MODULUS, WLZ_VTX_3_ADD, WLZ_VTX_3_SCALE, WLZ_VTX_3_ZERO, WlzAffineTransformVertexD2(), WlzAffineTransformVertexD3(), WlzCentreOfMass2D(), WlzCentreOfMass3D(), WlzEndGreyScan(), WlzFreeObj(), WlzGMVertexGetG3D(), WlzGreyTableIsTiled(), WlzInitGreyScan(), WlzInitRasterScan(), WlzMakeMain(), WlzNextGreyInterval(), and WlzNextInterval().

Referenced by WlzGeometryLSqOPlane().

WlzErrorNum WlzDistMetricGM	(	WlzGMModel *	model0,
		WlzGMModel *	model1,
		double *	dstDistH,
		double *	dstDistM,
		double *	dstDistN,
		double *	dstDistI
	)

Computes any combination of the Hausdorff, mean nearest neighbour, median nearest neighbour and minimum nearest neighbour distances between the vertices of the given geometric models. See WlzDistMetricVertex2D() for details of the metrics.

Returns

Woolz error code.

Parameters

model0	First geometric model.
model1	Second geometric model.
dstDistH	Destination pointer for the directed Hausdorff distance, may be NULL.
dstDistM	Destination pointer for the directed mean nearest neighbour distance, may be NULL.
dstDistN	Destination pointer for the directed median nearest neighbour distance, may be NULL.
dstDistI	Destination pointer for the minimum nearest neighbour distance, may be NULL.

References AlcFree(), _WlzGMModel::type, _WlzVertexP::v, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_VERTEX_D2, WLZ_VERTEX_D3, WlzDistMetricVertex2D(), WlzDistMetricVertex3D(), and WlzVerticesFromGM().

WlzErrorNum WlzDistMetricDirGM	(	WlzGMModel *	model0,
		WlzGMModel *	model1,
		double *	dstDistH,
		double *	dstDistM,
		double *	dstDistN,
		double *	dstDistI
	)

Computes any combination of the directed Hausdorff, mean nearest neighbour, median nearest neighbour and minimum nearest neighbour distances between the vertices of the given geometric models. See WlzDistMetricDirVertex2D() for details of the metrics.

Returns

Woolz error code.

Parameters

model0	First geometric model.
model1	Second geometric model.
dstDistH	Destination pointer for the directed Hausdorff distance, may be NULL.
dstDistM	Destination pointer for the directed mean nearest neighbour distance, may be NULL.
dstDistN	Destination pointer for the directed median nearest neighbour distance, may be NULL.
dstDistI	Destination pointer for the minimum nearest neighbour distance, may be NULL.

References AlcFree(), _WlzGMModel::type, _WlzVertexP::v, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_VERTEX_D2, WLZ_VERTEX_D3, WlzDistMetricDirVertex2D(), WlzDistMetricDirVertex3D(), and WlzVerticesFromGM().

WlzErrorNum WlzDistMetricVertex2D	(	int	n0,
		WlzDVertex2 *	vx0,
		int	n1,
		WlzDVertex2 *	vx1,
		double *	dstDistH,
		double *	dstDistM,
		double *	dstDistN,
		double *	dstDistI
	)

Computes any combination of the Hausdorff, mean nearest neighbour, median nearest neighbour and minimum nearest neighbour distances between the given sets of vertices. Each of these distance measures is the maximum of the two possible directed measures:

\[ D = \max{(d(A,B), d(B,A))} \]

Where \(D\) is a non-directed distance metric and \(d\) is the associated directed distance metric. \(A\) and \(B\) are the two datasets.

Returns

Woolz error code.

Parameters

n0	Number of vertices in the first array.
vx0	First array of vertices.
n1	Number of vertices in the second array.
vx1	Second array of vertices.
dstDistH	Destination pointer for the directed Hausdorff distance, may be NULL.
dstDistM	Destination pointer for the directed mean nearest neighbour distance, may be NULL.
dstDistN	Destination pointer for the directed median nearest neighbour distance, may be NULL.
dstDistI	Destination pointer for the minimum nearest neighbour distance, may be NULL.

References WLZ_ERR_NONE, WLZ_MAX, and WlzDistMetricDirVertex2D().

Referenced by WlzDistMetricDirVertex3D(), and WlzDistMetricGM().

WlzErrorNum WlzDistMetricVertex3D	(	int	n0,
		WlzDVertex3 *	vx0,
		int	n1,
		WlzDVertex3 *	vx1,
		double *	dstDistH,
		double *	dstDistM,
		double *	dstDistN,
		double *	dstDistI
	)

Computes any combination of the Hausdorff, mean nearest neighbour, median nearest neighbour and minimum nearest neighbour distances between the given sets of vertices. See WlzDistMetricVertex2D() for an explaination of the distance metrics.

Returns

Woolz error code.

Parameters

n0	Number of vertices in the first array.
vx0	First array of vertices.
n1	Number of vertices in the second array.
vx1	Second array of vertices.
dstDistH	Destination pointer for the directed Hausdorff distance, may be NULL.
dstDistM	Destination pointer for the directed mean nearest neighbour distance, may be NULL.
dstDistN	Destination pointer for the directed median nearest neighbour distance, may be NULL.
dstDistI	Destination pointer for the minimum nearest neighbour distance, may be NULL.

References WLZ_ERR_NONE, WLZ_MAX, and WlzDistMetricDirVertex3D().

Referenced by WlzDistMetricGM().

WlzErrorNum WlzDistMetricDirVertex2D	(	int	n0,
		WlzDVertex2 *	vx0,
		int	n1,
		WlzDVertex2 *	vx1,
		double *	dstDistH,
		double *	dstDistM,
		double *	dstDistN,
		double *	dstDistI
	)

Computes any combination of the directed Hausdorff, mean nearest neighbour, median nearest neighbour and minimum mean neighbour distances between the given sets of vertices. The directed Hausdorff distance metric is:

\[ \max_{a \in A}{\min_{b \in B}{\|a - b\|}} \]

The directed mean nearest neighbour distance metric is:

\[ \frac{1}{n_a} \sum_{a \in A}{\min_{b \in B}{\|a - b\|}} \]

Likewise the directed median nearest neighbour distance metric is:

\[ \mathrm{median}_{a \in A}{\min_{b \in B}{\|a - b\|}} \]

Where \(A\) and \(B\) are the two datasets.

Returns

Woolz error code.

Parameters

n0	Number of vertices in the first array.
vx0	First array of vertices.
n1	Number of vertices in the second array.
vx1	Second array of vertices.
dstDistH	Destination pointer for the directed Hausdorff distance, may be NULL.
dstDistM	Destination pointer for the directed mean nearest neighbour distance, may be NULL.
dstDistN	Destination pointer for the directed median nearest neighbour distance, may be NULL.
dstDistI	Destination pointer for the minimum nearest neighbour distance, may be NULL.

References AlcFree(), AlcKDTGetNN(), AlcKDTTreeFree(), AlcMalloc(), AlgRankSelectD(), _WlzVertexP::d2, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_PARAM_DATA, WLZ_ERR_PARAM_NULL, WLZ_VERTEX_D2, and WlzVerticesBuildTree().

Referenced by WlzDistMetricDirGM(), and WlzDistMetricVertex2D().

WlzErrorNum WlzDistMetricDirVertex3D	(	int	n0,
		WlzDVertex3 *	vx0,
		int	n1,
		WlzDVertex3 *	vx1,
		double *	dstDistH,
		double *	dstDistM,
		double *	dstDistN,
		double *	dstDistI
	)

Computes any combination of the directed Hausdorff, mean nearest neighbour, median nearest neighbour and minimum nearest neighbour distances between the given sets of vertices. See WlzDistMetricDirVertex2D() for an explaination of the distance metrics.

Returns

Woolz error code.

Parameters

n0	Number of vertices in the first array.
vx0	First array of vertices.
n1	Number of vertices in the second array.
vx1	Second array of vertices.
dstDistH	Destination pointer for the directed Hausdorff distance, may be NULL.
dstDistM	Destination pointer for the directed mean nearest neighbour distance, may be NULL.
dstDistN	Destination pointer for the directed median nearest neighbour distance, may be NULL.
dstDistI	Destination pointer for the minimum nearest neighbour distance, may be NULL.

References AlcFree(), AlcKDTGetNN(), AlcKDTTreeFree(), AlcMalloc(), AlgRankSelectD(), _WlzVertexP::d3, main(), _WlzDVertex2::vtX, _WlzDVertex2::vtY, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_PARAM_DATA, WLZ_ERR_PARAM_NULL, WLZ_VERTEX_D3, WlzDistMetricVertex2D(), and WlzVerticesBuildTree().

Referenced by WlzDistMetricDirGM(), and WlzDistMetricVertex3D().

WlzDVertex3* WlzGeometryTrackUpAndDown_s	(	int	numberOfPixelsZ,
		int	startTrackingFile,
		int	numberOfFilesDownOrUp,
		double	disForInAndOutGuid,
		double	disForInAndOut,
		unsigned char **	TwoDImageFilesNameList,
		int	numOf2DWlzFiles,
		int	downOrUp,
		int	sectionLength_N,
		int	subSubSectionLength_L,
		int	numberOfSampleP_k,
		char *	surfacePointFileName,
		char *	surfaceInPointFileName,
		char *	surfaceOutPointFileName,
		int	startShell,
		int	endShell,
		int	startSection,
		int	endSection,
		double	minDis,
		WlzErrorNum *	dstErr
	)

Track a curved path through a set of geometric model shells.

Returns

An array of vertices tracking thougha set of geometry model shells

Parameters

numberOfPixelsZ	the input z-derection of pixel number (input)
startTrackingFile	not documented
numberOfFilesDownOrUp	numner of files (?)
disForInAndOutGuid	distance parameter
disForInAndOut	distance parameter
TwoDImageFilesNameList	2D image files name list
numOf2DWlzFiles	number of 2D woolz files
downOrUp	tracking direction flag
sectionLength_N	length used to cut a patch (unit in pixel)
subSubSectionLength_L	length, smaller than sectionLength_N used to sample points
numberOfSampleP_k	number of points will be sampled in the above section
surfacePointFileName	FileNameStr to output the surface points
surfaceInPointFileName	FileNameStr to output the in surface points
surfaceOutPointFileName	FileNameStr to output the out surface points
startShell	the n-th Shell to begin with tracking
endShell	the end Shell from where stop tracking
startSection	the n-th Section to begin with tracking
endSection	the section to stop tracking.
minDis	minimum distance (?)
dstErr	error return.

Source:

WlzGeometryTrackUpAndDown_s.c

Author

: J. Rao, R. Baldock and B. Hill

References ALC_ER_NONE, AlcFree(), AlcKDTGetNN(), AlcKDTTreeFacts(), AlcMalloc(), AlcVectorItemGet(), _WlzGMShell::child, _WlzGMModel::child, _WlzDomain::ctr, _WlzVertexP::d2, _WlzVertexP::d3, _WlzGMVertexT::diskT, _WlzGMVertex::diskT, _WlzObject::domain, _WlzGMEdgeT::edge, _WlzGMEdge::edgeT, _WlzGMLoopT::edgeT, free_matrix(), free_vector(), _WlzGMVertex::geo, _AlcKDTNode::idx, _WlzGMVertex::idx, _WlzGMDiskT::idx, _WlzGMLoopT::idx, _WlzGMShell::idx, _AlcPointP::kD, _AlcKDTNode::key, _WlzGMModelR::loopT, matrix(), MaxNumOfFiles, _WlzContour::model, _WlzGMEdgeT::next, _WlzGMLoopT::next, _WlzGMShell::next, NumberToTrack, _WlzGMEdgeT::opp, _WlzGMVertexT::parent, _WlzGMEdgeT::parent, _WlzGMLoopT::parent, _WlzGMEdgeT::prev, _WlzGMModel::res, _WlzGMModelR::shell, TOL, _WlzGMModel::type, _WlzGeomPolyListItem2D::v, _WlzVertexP::v, _WlzGMResource::vec, vector(), _WlzGMDiskT::vertex, _WlzGMModelR::vertex, _WlzGMDiskT::vertexT, _WlzGMEdgeT::vertexT, _WlzGMVertexGU::vg2D, _WlzGMVertexGU::vg2I, _WlzGMVertexGU::vg3D, _WlzGMVertexGU::vg3I, _WlzIVertex2::vtX, _WlzDVertex2::vtX, _WlzIVertex3::vtX, _WlzDVertex3::vtX, _WlzGMVertexG2I::vtx, _WlzGMVertexG2D::vtx, _WlzGMVertexG3I::vtx, _WlzGMVertexG3D::vtx, _WlzIVertex2::vtY, _WlzDVertex2::vtY, _WlzIVertex3::vtY, _WlzDVertex3::vtY, _WlzIVertex3::vtZ, _WlzDVertex3::vtZ, WLZ_CONTOUR, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_FILE_OPEN, WLZ_ERR_GMELM_NULL, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_PARAM_NULL, WLZ_GMMOD_2D, WLZ_GMMOD_2I, WLZ_GMMOD_3D, WLZ_GMMOD_3I, WLZ_VTX_2_ADD, WLZ_VTX_2_LENGTH, WLZ_VTX_2_SCALE, WLZ_VTX_2_SUB, WlzFreeObj(), WlzGeomTriangleNormal(), WlzGeomTriangleSnArea2(), WlzGMModelDeleteS(), WlzGMModelDeleteV(), WlzReadObj(), WlzValueCopyDVertexToDVertex3(), WlzVerticesBuildTree(), and WlzVerticesFromObj().

size_t WlzGreySize

(

WlzGreyType

gType

)

Given a grey type, computes the number of bytes required to to store a single grey value of that type. Note the grey type WLZ_GREY_BIT is able to store multiple values in a single byte but one byte is required to store a single bit.

Returns

Number of bytes required to store a single grey value or zero on error (invalid grey type).

Parameters

gType

Given grey type.

References _WlzGreyP::dbp, _WlzGreyP::flp, _WlzGreyP::inp, _WlzIntervalWSpace::lftpos, _WlzGreyWSpace::pixeltype, _WlzIntervalWSpace::plnpos, _WlzGreyP::rgbp, _WlzIntervalWSpace::rgtpos, _WlzGreyP::shp, _WlzGreyWSpace::tvb, _WlzGreyWSpace::u_grintptr, _WlzGreyP::ubp, WLZ_ERR_EOO, WLZ_ERR_GREY_TYPE, WLZ_ERR_NONE, WLZ_GREY_BIT, WLZ_GREY_DOUBLE, WLZ_GREY_ERROR, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_LONG, WLZ_GREY_RGBA, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_RGBA_MODULUS, WlzEndGreyScan(), WlzInitGreyScan(), and WlzNextGreyInterval().

Referenced by WlzBuildObj3B(), WlzCopyValues(), WlzCutObjToValBox2D(), WlzCutObjToValBox3D(), WlzEffWriteObjNifti(), WlzFreeTiledValues(), WlzIndexedValueSize(), WlzMakeCuboid(), WlzMakeIndexedValues(), WlzMakeLUTValues(), WlzMakePointValues(), WlzMakeTiledValueBuffer(), WlzMakeTiledValuesTiles(), WlzReadObj(), and WlzWriteMeshTransform3D().

int WlzGreyStats	(	WlzObject *	srcObj,
		WlzGreyType *	dstGType,
		double *	dstMin,
		double *	dstMax,
		double *	dstSum,
		double *	dstSumSq,
		double *	dstMean,
		double *	dstStdDev,
		WlzErrorNum *	dstErr
	)

Calculates simple quick statistics for given 2D or 3D domain object with grey values. Pointers provided for results may be NULL without causing an error.

Returns

Object area or -1 on error.

Parameters

srcObj	Object from which to calculate the statistics.
dstGType	Pointer for grey type.
dstMin	Pointer for minimum value.
dstMax	Pointer for maximum value.
dstSum	Pointer for sum of values.
dstSumSq	Pointer for sum of squares of values.
dstMean	Mean value.
dstStdDev	Standard deviation of values.
dstErr	Destination pointer for error number, may be NULL if not required.

References _WlzValues::core, _WlzDomain::core, _WlzObject::domain, _WlzPlaneDomain::domains, _WlzPlaneDomain::lastpl, _WlzDomain::p, _WlzPlaneDomain::plane1, _WlzObject::type, _WlzCoreDomain::type, _WlzCoreValues::type, _WlzObject::values, _WlzVoxelValues::values, _WlzValues::vox, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_DBG, WLZ_DBG_LVL_1, WLZ_DBG_LVL_2, WLZ_DBG_LVL_FN, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_DATA, WLZ_ERR_VALUES_NULL, WLZ_PLANEDOMAIN_DOMAIN, WlzFreeObj(), WlzGreyTableIsTiled(), and WlzMakeMain().

Referenced by main(), WlzEffWriteObjAnl(), WlzGetPatchTreeToDepth(), WlzInteriority(), WlzPatchTreeToObject(), WlzRegCCorObjs(), WlzRGBAGreyStats(), WlzToArray2D(), and WlzToArray3D().

WlzObject* WlzGreyValueMixing_s	(	WlzObject *	sObj,
		WlzObject *	tObj,
		double	xmiddle,
		WlzErrorNum *	dstErr
	)

calculate the distance map of a woolz obj

Returns

Woolz obj contain the mixing grey value.

Parameters

sObj	Given Woolz grey value source object.
tObj	Given Woolz grey value target object.
xmiddle	mixing parameters
dstErr	Destination error pointer.

References _WlzGreyP::dbp, _WlzGreyP::flp, _WlzGreyValueWSpace::gPtr, _WlzGreyValueWSpace::gType, _WlzGreyValueWSpace::gVal, _WlzGreyP::inp, _WlzGreyP::shp, _WlzObject::type, _WlzGreyP::ubp, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_GREY_TYPE, WLZ_ERR_NONE, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WlzBoundingBox3I(), WlzCopyObject(), WlzGreyValueFreeWSp(), WlzGreyValueGetDir(), WlzGreyValueMakeWSp(), _WlzIBox3::xMax, _WlzIBox3::xMin, _WlzIBox3::yMax, _WlzIBox3::yMin, _WlzIBox3::zMax, and _WlzIBox3::zMin.

double* WlzInteriorityN	(	WlzObject *	refObj,
		int	nTstObj,
		WlzObject **	tstObjs,
		WlzErrorNum *	dstErr
	)

Computes an interiority score for each test object with respect to the reference object. See WlzInteriority(). This function computes the distance transform for the reference domain once and then uses this for each of the test domains. If not NULL the returned array of scores should be freed using AlcFree().

Returns

Array of interiority scores with a score for each of the test objects or NULL on error.

Parameters

refObj	Given reference object.
nTstObj	Number of test objects.
tstObjs	Array of test objects.
dstErr	Destination error pointer, may be NULL.

References AlcCalloc(), AlcFree(), _WlzDomain::core, _WlzObject::domain, _WlzObject::type, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_EMPTY_OBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_PARAM_DATA, WLZ_ERR_PARAM_NULL, WlzAssignObject(), and WlzFreeObj().

double WlzInteriority	(	WlzObject *	refObj,
		WlzObject *	tstObj,
		WlzErrorNum *	dstErr
	)

Computes an interiority score for the test object with respect to the reference object. The interiority score is the mean distance of those elements of the intersection of the reference and test object from the boundary of the reference object, ie:

\[ s = t \cap r b = t \neg t^- i = \frac{1}{|s|} \sum_{s}{D(b, s)} \]

where \(t\) is a test object, \(t^-\) is the eroded test object, \(|x|\) is the cardinality of \(x\) and \(D\) is the distance operator.

Returns

Interiority score for the test object.

Parameters

refObj	Given reference object.
tstObj	Array of test objects.
dstErr	Destination error pointer, may be NULL.

References _WlzDomain::core, _WlzObject::domain, _WlzGreyV::inv, _WlzPixelV::type, _WlzObject::type, _WlzPixelV::v, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_EMPTY_OBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_GREY_INT, WLZ_GREY_TAB_RAGR, WLZ_OCTAGONAL_DISTANCE, WlzAssignObject(), WlzBoundaryDomain(), WlzDistanceTransform(), WlzFreeObj(), WlzGreyStats(), WlzGreyTransfer(), WlzGreyValueTableType(), WlzIntersect2(), WlzIsEmpty(), and WlzNewObjectValues().

int WlzLineArea	(	WlzObject *	obj,
		WlzErrorNum *	dstErr
	)

Calculate the line-area of an object defined as the sum of the line segments bounded by the left hand end of the first interval in a line and the right hand end of the last interval in that line.

Returns

Line area calculated, -1 on error.

Parameters

obj	Input object.
dstErr	Error return.

Source:

WlzLineArea.c

References _WlzDomain::core, _WlzObject::domain, _WlzDomain::i, _WlzIntervalWSpace::intrmn, _WlzIntervalDomain::kol1, _WlzIntervalDomain::lastkl, _WlzIntervalDomain::lastln, _WlzIntervalWSpace::lftpos, _WlzIntervalDomain::line1, _WlzIntervalWSpace::rgtpos, _WlzObject::type, _WlzIntervalDomain::type, WLZ_2D_DOMAINOBJ, WLZ_EMPTY_OBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_EOO, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_INTERVALDOMAIN_INTVL, WLZ_INTERVALDOMAIN_RECT, WLZ_RASTERDIR_ILIC, WlzInitRasterScan(), and WlzNextInterval().

Referenced by WlzNewValueTb(), and WlzReadObj().

WlzObject* WlzMakeMarkers	(	WlzVertexType	vType,
		int	nVtx,
		WlzVertexP	vtx,
		WlzMarkerType	mType,
		int	mSz,
		WlzErrorNum *	dstErr
	)

Constructs a domain from the union of marker domains with a marker domain at each of the given vertex positions.

Returns

New domain object without values.

Parameters

vType	Vertex type.
nVtx	Number of vertices.
vtx	Given vertices.
mType	Marker type.
mSz	Marker size. This is the radius of a sphere marker. The marker size is ignored for point markers.
dstErr	Destination error pointer, may be NULL.

References _WlzVertexP::i2, _WlzVertexP::i3, _WlzVertexP::v, _WlzIVertex3::vtX, _WlzIVertex3::vtY, _WlzIVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_NONE, WLZ_ERR_PARAM_DATA, WLZ_ERR_PARAM_NULL, WLZ_ERR_PARAM_TYPE, WLZ_MARKER_POINT, WLZ_MARKER_SPHERE, WLZ_VERTEX_I2, WLZ_VERTEX_I3, WlzFreeObj(), WlzMakeEmpty(), WlzMakeSinglePixelObject(), WlzMakeSphereObject(), WlzShiftObject(), and WlzUnion2().

Referenced by WlzMarkerLattice(), and WlzPointsToMarkers().

WlzObject* WlzMarkerLattice	(	WlzObject *	gObj,
		WlzMarkerType	mType,
		int	mSz,
		int	mSep,
		WlzErrorNum *	dstErr
	)

Creates a new domain object that is a formed from a lattice of markers covering the given domain.

Returns

New domain object without values.

Parameters

gObj	Given spatial domain object.
mType	Marker type.
mSz	Marker size.
mSep	Marker separation.
dstErr	Destination error pointer, may be NULL.

References AlcFree(), _WlzValues::core, _WlzDomain::core, _WlzObject::domain, _WlzVertexP::i2, _WlzVertexP::i3, _WlzObject::type, _WlzVertexP::v, _WlzIVertex2::vtX, _WlzIVertex3::vtX, _WlzIVertex2::vtY, _WlzIVertex3::vtY, _WlzIVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_INTERPOLATION_NEAREST, WLZ_TRANSFORM_2D_AFFINE, WLZ_TRANSFORM_3D_AFFINE, WLZ_VERTEX_I2, WLZ_VERTEX_I3, WlzAffineTransformFromPrimVal(), WlzAffineTransformObj(), WlzFreeAffineTransform(), WlzFreeObj(), WlzMakeMain(), WlzMakeMarkers(), WlzVerticesFromObj2I(), and WlzVerticesFromObj3I().

WlzPoints* WlzMakePoints	(	WlzObjectType	type,
		int	nVtx,
		WlzVertexP	vtxP,
		int	maxVtx,
		WlzErrorNum *	dstErr
	)

Creates a new point domain. A point domain consists of an array of vertices which are treated as seperate points.

Returns

New point domain.

Parameters

type	Type of point vertices, which must be one of WLZ_POINTS_2I, WLZ_POINTS_2D, WLZ_POINTS_3I or WLZ_POINTS_3D.
nVtx	Number of points to copy to the new domain.
vtxP	Points to copy to the new domain. These must be of the correct type. If NULL then no points are copied.
maxVtx	The number of vertices for which space is allocated.
dstErr	Destination error pointer, may be NULL.

References AlcCalloc(), _WlzPoints::maxPoints, _WlzPoints::nPoints, _WlzPoints::points, _WlzPoints::type, _WlzVertexP::v, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_POINTS_2D, WLZ_POINTS_2I, WLZ_POINTS_3D, and WLZ_POINTS_3I.

Referenced by WlzAffineTransformPoints(), WlzCMeshStrainTensorAtPts(), WlzCMeshTransformManyObjAsIdx(), WlzEffWritePointsVtkFieldValues(), WlzPointsDither(), WlzPointsFromDomObj(), WlzReadMeshTransform3D(), and WlzThinToPoints().

WlzErrorNum WlzNObjGreyStats	(	WlzObject *	gObj,
		int	mean,
		int	stddev,
		int *	dstN,
		WlzObject **	dstMinObj,
		WlzObject **	dstMaxObj,
		WlzObject **	dstSumObj,
		WlzObject **	dstSSqObj
	)

Computes a collection of objects from the object (which should be a compound array object). The computed objects all have the intersection of the given object domains as their domain and WLZ_GREY_DOUBLE values for the minimum, maximum, sum and sum of squares of the given grey values at each pixel/voxel within the intersection domain. Returned objects will have name properties set to: min, max, sum, ssq, mean and stddev as appropriate.

Returns

Woolz error code.

Parameters

gObj	Given object.
mean	Compute mean not sum if non-zero.
stddev	Compute standard deviation not sum of squares if non-zero.
dstN	Destination pointer for number of objects, may be NULL.
dstMinObj	Destination pointer for minimum value object, may be NULL if not required.
dstMaxObj	Destination pointer for maximum value object, may be NULL if not required.
dstSumObj	Destination pointer for sum of values object, may be NULL if not required.
dstSSqObj	Destination pointer for sum of squares object, may be NULL if not required.

References ALC_ER_NONE, AlcDLPListEntryAppend(), _WlzValues::core, _WlzDomain::core, _WlzProperty::core, _WlzGreyP::dbp, _WlzGreyV::dbv, _WlzObject::domain, _WlzPlaneDomain::domains, _WlzPlaneDomain::lastpl, _WlzIntervalWSpace::lftpos, _WlzPropertyList::list, _WlzProperty::name, _WlzDomain::p, _WlzGreyWSpace::pixeltype, _WlzPlaneDomain::plane1, _WlzObject::plist, _WlzIntervalWSpace::rgtpos, _WlzPixelV::type, _WlzObject::type, _WlzCoreValues::type, _WlzGreyWSpace::u_grintptr, _WlzGreyP::ubp, _WlzPixelV::v, _WlzObject::values, _WlzVoxelValues::values, _WlzValues::vox, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_BO_SUBTRACT, WLZ_COMPOUND_ARR_1, WLZ_COMPOUND_ARR_2, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_EOO, WLZ_ERR_GREY_TYPE, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_NULL, WLZ_ERR_VALUES_TYPE, WLZ_FN_SCALAR_SQR, WLZ_FN_SCALAR_SQRT, WLZ_GREY_DOUBLE, WLZ_GREY_TAB_RAGR, WLZ_GREY_UBYTE, WlzAssignPropertyList(), WlzEndGreyScan(), WlzFreeObj(), WlzFreeProperty(), WlzFreePropertyListEntry(), WlzGreySetValue(), WlzGreyTableIsTiled(), WlzGreyValueTableType(), WlzImageArithmetic(), WlzInitGreyScan(), WlzIntersectN(), WlzIsEmpty(), WlzMakeMain(), WlzMakeNameProperty(), WlzMakePropertyList(), WlzNewObjectValues(), WlzNextGreyInterval(), WlzScalarFn(), and WlzScalarMultiply().

WlzErrorNum Wlz3DSectionOcc	(	WlzObject *	obj,
		WlzThreeDViewStruct *	vs,
		double	sep,
		double *	dstFirst,
		double *	dstLast,
		int *	dstArraySizeOcc,
		int **	dstArrayOcc
	)

Computes an array of integers which correspond to a line through the given object's domain perpendicular to the plane defined by the given view structure. At each point along the line the occupancy area or number of domains intersecting the plane is computed. When the given object is a 3D spatial domain object then areas are computed and when it is a compound array then the occupancy (number of domains) is computed.

Returns

Woolz error code.

Parameters

obj	Given object with the domain or a compound object with many domains.
vs	Given view structure which defines the cutting plane. The view structure will be initialised within this function.
sep	Plane separation distance, must be greater than ALG_DBL_TOLLERANCE.
dstFirst	Destination pointer for the first coordinate of the line in a 1D coordinate system perpendicular to the cutting plane. May be NULL.
dstLast	Destination pointer for the last coordinate of the line in a 1D coordinate system perpendicular to the cutting plane. May be NULL.
dstArraySizeOcc	Destination pointer for the size of the occupancy array. May be NULL.
dstArrayOcc	Destination pointer for the occupancy array. The occupancy array should be freed using AlcFree(). May be NULL.

References AlcCalloc(), AlcFree(), ALG_DBL_TOLLERANCE, _WlzDomain::core, _WlzThreeDViewStruct::dist, _WlzObject::domain, _WlzThreeDViewStruct::maxvals, _WlzThreeDViewStruct::minvals, _WlzCompoundArray::n, _WlzCompoundArray::o, _WlzThreeDViewStruct::ref_obj, _WlzObject::type, _WlzThreeDViewStruct::type, _WlzDVertex3::vtZ, WLZ_3D_DOMAINOBJ, WLZ_3D_VIEW_STRUCT, WLZ_COMPOUND_ARR_1, WLZ_COMPOUND_ARR_2, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOUBLE_DATA, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_PARAM_DATA, WLZ_ERR_PARAM_NULL, WLZ_ERR_PARAM_TYPE, WLZ_INTERPOLATION_NEAREST, WlzArea(), WlzAssignObject(), WlzFree3DViewStruct(), WlzFreeObj(), WlzGetSubSectionFromObject(), WlzInit3DViewStruct(), WlzIsEmpty(), WlzMake3DViewStructCopy(), and WlzUnionN().

WlzObject* WlzDomainOccupancy	(	WlzObject *	gObj,
		WlzErrorNum *	dstErr
	)

Computes a new Woolz domain object which has the domain of the given object (union of domains if the object is a compound array) and a value table with integer values representing the number of domains present.

Returns

New Woolz object or NULL on error.

Parameters

gObj	Given object.
dstErr	Destination error pointer.

References _WlzGreyV::inv, _WlzCompoundArray::n, _WlzCompoundArray::o, _WlzGreyV::shv, _WlzPixelV::type, _WlzObject::type, _WlzGreyV::ubv, _WlzPixelV::v, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_COMPOUND_ARR_1, WLZ_COMPOUND_ARR_2, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_GREY_INT, WLZ_GREY_SHORT, WLZ_GREY_TAB_RAGR, WLZ_GREY_UBYTE, WlzFreeObj(), WlzGreyIncValuesInDomain(), WlzGreySetValue(), WlzGreyValueTableType(), WlzNewObjectValues(), and WlzUnionN().

WlzObject* WlzOffsetDist	(	WlzObject *	obj0,
		WlzObject *	obj1,
		int	maxDist,
		WlzErrorNum *	dstErr
	)

Computes an object with domain and values that are the set of minimum distances between the two given objects. An equidistant boundary is computed between the domains of the two given objects, within maxDist of each object's domain and within the convex hull of the union of the two given object's domains. This function will probably only be useful where one of the objects tends to track the other.

Returns

New object with minimum distances.

Parameters

obj0	First given object.
obj1	Second given object.
maxDist	Maximum distance for offset. This is used to compute a distance object, large distances will significantly increase the processing time. If zero the maximum distance will be determined by the convex hull.
dstErr	Destination error pointer, may be NULL.

References _WlzDomain::core, _WlzObject::domain, _WlzGreyV::inv, _WlzPixelV::type, _WlzPixelV::v, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_BO_EQ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_GREY_INT, WLZ_OCTAGONAL_DISTANCE, WLZ_THRESH_HIGH, WlzAssignObject(), WlzConvexHullToObj(), WlzDistanceTransform(), WlzFreeObj(), WlzGreyTemplate(), WlzImageArithmetic(), WlzIntersect2(), WlzMakeEmpty(), WlzMakeSphereObject(), WlzObjToConvexHull(), WlzSetBackground(), WlzStructDilation(), WlzThreshold(), WlzUnionN(), and WlzVolume().

WlzObject* WlzPointsToDomObj	(	WlzPoints *	pnt,
		double	scale,
		WlzErrorNum *	dstErr
	)

Creates a domain object which coresponds to the union of the given points.

Returns

New domain object which coresponds to the union of the given points.

Parameters

pnt	Point domain.
scale	Scale, which if greater than zero is used as the diameter of a circle or sphere centred on each of the points vertices and a multiplier for the point position.
dstErr	Destination error poiter, may be NULL.

References _WlzVertexP::d2, _WlzVertexP::d3, _WlzVertex::d3, _WlzVertexP::i2, _WlzVertexP::i3, _WlzVertex::i3, _WlzPoints::points, _WlzPoints::type, _WlzIVertex2::vtX, _WlzDVertex2::vtX, _WlzIVertex3::vtX, _WlzDVertex3::vtX, _WlzIVertex2::vtY, _WlzDVertex2::vtY, _WlzIVertex3::vtY, _WlzDVertex3::vtY, _WlzIVertex3::vtZ, _WlzDVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_ERR_PARAM_TYPE, WLZ_NINT, WLZ_POINTS_2D, WLZ_POINTS_2I, WLZ_POINTS_3D, WLZ_POINTS_3I, WlzFreeObj(), WlzMakeEmpty(), WlzMakeSinglePixelObject(), WlzMakeSphereObject(), and WlzUnion2().

Referenced by WlzDistanceTransform().

WlzPoints* WlzPointsFromDomObj	(	WlzObject *	gvnObj,
		double	dMin,
		int	useFloatingPoint,
		int	voxelScaling,
		int	useGrey,
		double	gMin,
		double	gMax,
		double	gGam,
		WlzErrorNum *	dstErr
	)

Finds points which are within the given opjects domain and are seperated by at least the given minimum distance. If the given object's grey values are used, then the probability of a point being placed is proportional to:

\[ \left\{ \begin{array}{ll} 0.0 & g_i < g_{min} \\ frac{(g_i - g_{min})^\gamma}{g_{max} - g_{min}} & g_i > g_{min} \end{array} \right. \]

.

Returns

New points domain or NULL on error.

Parameters

gvnObj	Given spatial domain object.
dMin	Given minimum distance (if less than 1.0 then will be set to 1.0).
useFloatingPoint	If non-zero (or voxelScaling is set) the the points will always have double (rather than int) point positions.
voxelScaling	Use voxel scaling if non-zero (voxel scaling implies floating point).
useGrey	Use grey values.
gMin	Minimum grey value.
gMax	Maximum grey value.
gGam	Gamma for grey value.
dstErr	Destination error pointer, may be NULL.

References ALC_ER_NONE, ALC_POINTTYPE_INT, AlcFree(), AlcKDTGetNN(), AlcKDTInsert(), AlcKDTTreeFree(), AlcKDTTreeNew(), AlcRealloc(), AlcVectorExtend(), AlcVectorFree(), AlcVectorItemGet(), AlcVectorNew(), ALG_NINT, AlgRandUniform(), AlgShuffleIdx(), _WlzValues::core, _WlzDomain::core, _WlzVertexP::d2, _WlzVertexP::d3, _WlzGreyV::dbv, _WlzObject::domain, _WlzGreyV::flv, _WlzGreyValueWSpace::gType, _WlzGreyValueWSpace::gVal, _WlzVertexP::i2, _WlzVertexP::i3, _WlzGreyV::inv, _WlzPoints::nPoints, _WlzDomain::p, _WlzPoints::points, _WlzGreyV::rgbv, _WlzGreyV::shv, _WlzPixelV::type, _WlzObject::type, _WlzCoreDomain::type, _WlzGreyV::ubv, _WlzVertexP::v, _WlzPixelV::v, _WlzObject::values, _WlzPlaneDomain::voxel_size, _WlzIVertex2::vtX, _WlzDVertex2::vtX, _WlzIVertex3::vtX, _WlzDVertex3::vtX, _WlzIVertex2::vtY, _WlzDVertex2::vtY, _WlzIVertex3::vtY, _WlzDVertex3::vtY, _WlzIVertex3::vtZ, _WlzDVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_GREY_TYPE, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_PARAM_DATA, WLZ_ERR_VALUES_NULL, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_RGBA, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_INTERVALDOMAIN_INTVL, WLZ_INTERVALDOMAIN_RECT, WLZ_PLANEDOMAIN_DOMAIN, WLZ_POINTS_2I, WLZ_POINTS_3D, WLZ_POINTS_3I, WLZ_RGBA_MODULUS, WLZ_THRESH_HIGH, WLZ_THRESH_LOW, WlzAssignObject(), WlzBoundaryDomain(), WlzFreeObj(), WlzGreyValueFreeWSp(), WlzGreyValueGet(), WlzGreyValueMakeWSp(), WlzIsEmpty(), WlzMakeCuboidObject(), WlzMakeMain(), WlzMakePoints(), WlzMakeRectangleObject(), WlzStructErosion(), WlzThreshold(), WlzVerticesFromObj2I(), and WlzVerticesFromObj3I().

Referenced by WlzDGTensorFeatures().

WlzPointValues* WlzPointValuesFromDomObj	(	WlzPoints *	pdm,
		WlzObject *	domObj,
		WlzErrorNum *	dstErr
	)

Creates a new point values using the given points domain and domain object with values. Values are sampled from the domain object using the locations of the points in the points domain.

Returns

New point values or NULL on error.

Parameters

pdm	Given points domain.
domObj	Given domain object with values.
dstErr	Destination error pointer, may be NULL.

References AlcFree(), AlcMalloc(), _WlzValues::core, _WlzDomain::core, _WlzVertexP::d2, _WlzVertexP::d3, _WlzGreyP::dbp, _WlzObject::domain, _WlzGreyP::flp, _WlzGreyValueWSpace::gPtr, _WlzGreyValueWSpace::gType, _WlzVertexP::i2, _WlzVertexP::i3, _WlzGreyP::inp, _WlzPoints::nPoints, _WlzPoints::points, _WlzGreyP::rgbp, _WlzGreyP::shp, _WlzObject::type, _WlzPoints::type, _WlzGreyP::ubp, _WlzGreyP::v, _WlzObject::values, _WlzPointValues::values, _WlzIVertex2::vtX, _WlzDVertex2::vtX, _WlzIVertex3::vtX, _WlzDVertex3::vtX, _WlzIVertex2::vtY, _WlzDVertex2::vtY, _WlzIVertex3::vtY, _WlzDVertex3::vtY, _WlzIVertex3::vtZ, _WlzDVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_GREY_TYPE, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_NULL, WLZ_GREY_DOUBLE, WLZ_GREY_ERROR, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_RGBA, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_POINTS_2D, WLZ_POINTS_2I, WLZ_POINTS_3D, WLZ_POINTS_3I, WLZ_VERTEX_D2, WLZ_VERTEX_D3, WLZ_VERTEX_ERROR, WLZ_VERTEX_I2, WLZ_VERTEX_I3, WlzFreePointValues(), WlzGreyValueFreeWSp(), WlzGreyValueGet(), WlzGreyValueMakeWSp(), and WlzMakePointValues().

WlzObject* WlzPointsToMarkers	(	WlzPoints *	pts,
		WlzMarkerType	mType,
		int	mSz,
		WlzErrorNum *	dstErr
	)

Constructs a domain from the union of marker domains with a marker domain at each of the given point positions.

Returns

New domain object without values.

Parameters

pts	Given points.
mType	Marker type.
mSz	Marker size. This is the radius of a sphere marker. The marker size is ignored for point markers.
dstErr	Destination error pointer, may be NULL.

References _WlzPoints::nPoints, _WlzPoints::points, _WlzPoints::type, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_POINTS_2D, WLZ_POINTS_2I, WLZ_POINTS_3D, WLZ_POINTS_3I, WLZ_VERTEX_D2, WLZ_VERTEX_D3, WLZ_VERTEX_ERROR, WLZ_VERTEX_I2, WLZ_VERTEX_I3, and WlzMakeMarkers().

WlzPoints* WlzPointsDither	(	WlzPoints *	gPts,
		WlzDVertex3	dSz,
		WlzObject *	resObj,
		WlzErrorNum *	dstErr
	)

Dithers the vertices of the given points by adding a random displacement within the range -d to +d, where d is the given dither size.

Returns

New points domain.

Parameters

gPts	Given points.
dSz	Dither size (z component is not used if points are 2D).
resObj	If non NULL then the dithered points will always fall within the given spatial domain object's domain.
dstErr	Destination error pointer, may be NULL.

References AlgRandUniform(), _WlzVertexP::d2, _WlzVertex::d2, _WlzVertexP::d3, _WlzVertex::d3, _WlzVertexP::i2, _WlzVertexP::i3, _WlzPoints::nPoints, _WlzPoints::points, _WlzObject::type, _WlzPoints::type, _WlzVertexP::v, _WlzDVertex2::vtX, _WlzDVertex3::vtX, _WlzDVertex2::vtY, _WlzDVertex3::vtY, _WlzDVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_ERR_OBJECT_TYPE, WLZ_POINTS_2D, WLZ_POINTS_2I, WLZ_POINTS_3D, WLZ_POINTS_3I, WLZ_VTX_2_ADD, WLZ_VTX_2_COPY, WLZ_VTX_3_ADD, WLZ_VTX_3_COPY, WlzInsideDomain(), and WlzMakePoints().

Referenced by WlzDGTensorFeatures().

int WlzRGBAGreyStats	(	WlzObject *	srcObj,
		WlzRGBAColorSpace	colSpc,
		WlzGreyType *	dstGType,
		double *	dstMin,
		double *	dstMax,
		double *	dstSum,
		double *	dstSumSq,
		double *	dstMean,
		double *	dstStdDev,
		WlzErrorNum *	dstErr
	)

Calculates simple quick statistics for the domain object with RGBA values. Each component has its statictics computed and entered into the four double[4] arrays.

Returns

Object area or -1 on error.

Parameters

srcObj	Given object.
colSpc	Colour space.
dstGType	Pointer for grey type.
dstMin	Array for the 4 minimum value.
dstMax	Array for the 4 maximum value.
dstSum	Array for the 4 sum of values.
dstSumSq	Array for the 4 sum of squares of values.
dstMean	Array for the 4 mean values.
dstStdDev	Array for the 4 standard deviation values.
dstErr	Destination pointer for error, may be NULL.

References _WlzCompoundArray::o, WLZ_ERR_NONE, WLZ_GREY_RGBA, WlzFreeObj(), WlzGreyStats(), and WlzRGBAToCompound().

Referenced by WlzPatchTreeToObject().

WlzErrorNum WlzSampleValuesAndCoords	(	WlzObject *	obj,
		WlzGreyType *	dstGType,
		int *	dstNVal,
		WlzGreyP *	dstValP,
		WlzVertexP *	dstCoords,
		WlzSampleFn	samFn,
		int	samFac
	)

Allocates buffers for both the grey values and the coordinates of the grey values in the given object. On return these buffers contain the sampled object values and the coordinates of the values.

Returns

Parameters

obj	Given object.
dstGType	Type of grey value.
dstNVal	Number of grey values, also the number of coordinates.
dstValP	Destination pointer for the values.
dstCoords	Destination pointer for the coordinates, these are always either WlzIVertex2 or WlzIVertex3 depending on the objects dimension.
samFn	Sampling function.
samFac	Sampling factor.

References AlcCalloc(), AlcFree(), AlcMalloc(), AlcRealloc(), _WlzValues::core, _WlzDomain::core, _WlzGreyP::dbp, _WlzObject::domain, _WlzGreyP::flp, _WlzDomain::i, _WlzVertexP::i2, _WlzGreyP::inp, _WlzIntervalWSpace::intrmn, _WlzIntervalDomain::kol1, _WlzIntervalDomain::lastkl, _WlzIntervalWSpace::lftpos, _WlzIntervalDomain::line1, _WlzIntervalWSpace::linpos, _WlzIntervalWSpace::linrmn, _WlzGreyWSpace::pixeltype, _WlzGreyP::rgbp, _WlzIntervalWSpace::rgtpos, _WlzGreyP::shp, _WlzObject::type, _WlzGreyWSpace::u_grintptr, _WlzGreyP::ubp, _WlzObject::values, _WlzIVertex2::vtX, _WlzIVertex2::vtY, WLZ_2D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_EOO, WLZ_ERR_GREY_TYPE, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_PARAM_DATA, WLZ_ERR_PARAM_NULL, WLZ_ERR_PARAM_TYPE, WLZ_ERR_VALUES_NULL, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_RGBA, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_SAMPLEFN_MAX, WLZ_SAMPLEFN_MIN, WlzArea(), WlzEndGreyScan(), WlzGreyTypeFromObj(), WlzInitGreyScan(), and WlzNextGreyInterval().

Referenced by WlzScalarFeatures2D().

WlzErrorNum WlzScalarFeatures2D	(	WlzObject *	obj,
		int *	dstNFeat,
		WlzIVertex2 **	dstFeat,
		WlzScalarFeatureType	fType,
		WlzThresholdType	thrHL,
		WlzPixelV	thrV,
		double	filterV,
		double	minDist
	)

Finds scalar features within the given object. Where the feature values are all either above or below the given threshold value, depending on the value of thrHL, and the features have the given minimum seperation distance.

Returns

Woolz error code.

    The features are found using the following algorithm:
    <ul>
      <li>
      Compute feature values from given object.
      </li>
      <li>
      Threshold and extract a list of features.
      </li>
      <li>
      Sort the list of features by value.
      </li>
      <li>
      Create a kD-tree.
      </li>
      <li>
      While the list of feature values is not empty.
      <ul>
        <li>
        Remove item from list of features.
        </li>
        <li>
        Find distance to nearest neighbour in the kD-tree.
        </li>
        <li>
        If the distance is greater than the minimum.
        <ul>
          <li>
          Add the feature to the kD-tree.
          </li>
        </ul></li>
      </ul></li>
      <li>
      Output features of the kD-tree.
      </li>
    </ul>
    The cost of this function depends on the threshold value
    and to some extent on the minimum distance.

    If feature values are computed then they are normalised
    using WlzGreyNormalise(), to allow threshold values to be
    set.

Parameters

obj	Given object.
fType	Type of feature to find.
thrHL	High or low feature values.
thrV	Threshold feature value.
minDist	Minimum distance between features.
dstNFeat	Destination pointer for the number of scalar features found.
dstFeat	Destination pointer for coordinates of the features found.
filterV	Filter value for computing features.
dstFeat	Destination pointer for the coordinates of the scalar features.

References ALC_ER_NONE, ALC_POINTTYPE_DBL, AlcFree(), AlcKDTGetNN(), AlcKDTInsert(), AlcKDTTreeFree(), AlcKDTTreeNew(), AlcMalloc(), AlgHeapSortCmpIdxDFn(), AlgHeapSortCmpIdxFFn(), AlgHeapSortCmpIdxIFn(), AlgHeapSortCmpIdxLFn(), AlgHeapSortCmpIdxSFn(), AlgHeapSortCmpIdxUFn(), AlgHeapSortIdx(), AlgHeapSortInvCmpIdxDFn(), AlgHeapSortInvCmpIdxFFn(), AlgHeapSortInvCmpIdxIFn(), AlgHeapSortInvCmpIdxLFn(), AlgHeapSortInvCmpIdxSFn(), AlgHeapSortInvCmpIdxUFn(), _WlzValues::core, _WlzDomain::core, _WlzObject::domain, _WlzVertexP::i2, _WlzGreyP::inp, _WlzObject::type, _WlzVertexP::v, _WlzObject::values, WLZ_2D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_GREY_TYPE, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_PARAM_DATA, WLZ_ERR_VALUES_NULL, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_LONG, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_SAMPLEFN_MAX, WLZ_SAMPLEFN_MIN, WLZ_SCALARFEATURE_GRADIENT, WLZ_SCALARFEATURE_VALUE, WLZ_THRESH_HIGH, WLZ_THRESH_LOW, WlzAssignObject(), WlzFreeObj(), WlzGreyModGradient(), WlzGreyNormalise(), WlzSampleValuesAndCoords(), and WlzThreshold().

WlzObject* WlzDGTensorFeatures	(	WlzObject *	mObj,
		unsigned int	features,
		int	points,
		double	dMin,
		WlzDVertex3	dither,
		WlzDVertex3	smooth,
		int	voxScaling,
		WlzErrorNum *	dstErr
	)

Computes features of a deformation gradient tensor field and creates a compound object, each element of which is a required feature of the given deformation gradient field object. The feature object may be either a points object or a spatial domain object as required. See WlzDGTensorSDFeature() which this function calls to compute the feature objects.

Returns

New compound object containing feature objects or NULL on error.

Parameters

mObj	Given deformation gradient field object. This must be a 3D object in which the (tiled) voxel values are each a nine element Jacobian deformation gradient tensor.
features	Mask with required features.
points	Generate a points object rather than a field.
dMin	If generating a points the points will have this minimum seperation distance (if less than 1.0 then will be set to 1.0).
dither	If generating a points object dither the points within this range (no dithering if values are zero). The dithering is always done in unit voxel space.
smooth	If smoothing values are > 0.0 apply a Gaussian smoothing filter with these sigma values to spatial field feature values. There is no smoothing of point feature values.
voxScaling	Use voxel size for points objects if non zero.
dstErr	Destination error pointer, may be NULL.

References _WlzValues::core, _WlzDomain::core, _WlzVertexP::d3, _WlzTiledValues::dim, _WlzObject::domain, _WlzCompoundArray::n, _WlzPoints::nPoints, _WlzCompoundArray::o, _WlzDomain::p, _WlzPoints::points, _WlzDomain::pts, _WlzValues::t, _WlzObject::type, _WlzCoreDomain::type, _WlzCoreValues::type, _WlzObject::values, _WlzTiledValues::vDim, _WlzPlaneDomain::voxel_size, _WlzTiledValues::vRank, _WlzDVertex3::vtX, _WlzDVertex3::vtY, _WlzDVertex3::vtZ, WLZ_3D_DOMAINOBJ, WLZ_COMPOUND_ARR_1, WLZ_DGTENSOR_FEATURE_LIMIT, WLZ_DGTENSOR_FEATURE_MASK, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_NULL, WLZ_ERR_VALUES_TYPE, WLZ_NULL, WLZ_PLANEDOMAIN_DOMAIN, WLZ_POINTS, WLZ_VTX_3_SQRLEN, WlzAssignDomain(), WlzAssignObject(), WlzDGTensorPDFeature(), WlzDGTensorSDFeature(), WlzFreeDomain(), WlzFreeObj(), WlzGreyTableIsTiled(), WlzMakeCompoundArray(), WlzPointsDither(), and WlzPointsFromDomObj().

WlzObject* WlzDGTensorSDFeature	(	WlzObject *	mObj,
		WlzDomain	fDom,
		WlzDGTensorFeatureType	feat,
		WlzDVertex3	smooth,
		WlzErrorNum *	dstErr
	)

Computes a feature of a deformation gradient tensor field throughout the given 3D spatial domain. This function assumes all input parameters to be valid, when this is not certain use WlzDGTensorFeatures(). The returned object will have it's name property set to an appropriate name for the required feature: WLZ_DGTENSOR_FEATURE_DETJAC ("jacobian"), WLZ_DGTENSOR_FEATURE_EIGENVEC ("eigen vectors") or WLZ_DGTENSOR_FEATURE_EIGENVAL ("eigen values").

Returns

New object containing features or NULL on error.

Parameters

mObj	Given deformation gradient field object. This must be a 3D object in which the (tiled) voxel values are each a nine element Jacobian deformation gradient tensor.
fDom	Given 3D spatial domain (WlzPlaneDomain).
feat	Required feature.
smooth	If values are > 0.0 apply a Gaussian smoothing filter with these sigma values to the feature values.
dstErr	Destination error pointer, may be NULL.

References ALC_ER_NONE, AlcDLPListEntryAppend(), ALG_MAX, ALG_MIN, AlgMatrixFree(), AlgMatrixRectNew(), _AlgMatrix::core, _WlzValues::core, _WlzProperty::core, _WlzGreyV::dbv, _WlzObject::domain, _WlzPlaneDomain::domains, _WlzDomain::i, _WlzInterval::ileft, _WlzInterval::iright, _WlzIntervalDomain::lastln, _WlzPlaneDomain::lastpl, _WlzIntervalDomain::line1, _WlzIntervalWSpace::linpos, _WlzPropertyList::list, _WlzProperty::name, _WlzDomain::p, _WlzPlaneDomain::plane1, _WlzObject::plist, _AlgMatrix::rect, _WlzPixelV::type, _WlzPixelV::v, _WlzDVertex3::vtX, _WlzDVertex3::vtY, _WlzDVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_DGTENSOR_FEATURE_DETJAC, WLZ_DGTENSOR_FEATURE_EIGENVAL, WLZ_DGTENSOR_FEATURE_EIGENVEC, WLZ_ERR_EOO, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_PARAM_DATA, WLZ_GREY_DOUBLE, WLZ_RASTERDIR_ILIC, WLZ_TILEDVALUES_TILE_SIZE, WlzAssignPropertyList(), WlzFreeObj(), WlzFreeProperty(), WlzFreePropertyList(), WlzFreePropertyListEntry(), WlzGreyValueFreeWSp(), WlzGreyValueMakeWSp(), WlzInitRasterScan(), WlzIWSpIntersection(), WlzMakeMain(), WlzMakeNameProperty(), WlzMakePropertyList(), WlzMakeTiledValuesObj3D(), WlzNextInterval(), and WlzTensorSmooth().

Referenced by WlzDGTensorFeatures().

WlzObject* WlzDGTensorPDFeature	(	WlzObject *	mObj,
		WlzDomain	fDom,
		WlzDGTensorFeatureType	feat,
		WlzErrorNum *	dstErr
	)

Computes a feature of a deformation gradient tensor field throughout the given 3D points domain. This function assumes all input parameters to be valid, when this is not certain use WlzDGTensorFeatures().

Returns

New object containing features or NULL on error.

Parameters

mObj	Given deformation gradient field object. This must be a 3D object in which the (tiled) voxel values are each a nine element Jacobian deformation gradient tensor.
fDom	Given 3D points domain (WlzPoints).
feat	Required feature.
dstErr	Destination error pointer, may be NULL.

References ALC_ER_NONE, AlcCalloc(), AlcDLPListEntryAppend(), AlcFree(), AlgMatrixFree(), AlgMatrixRectNew(), _WlzProperty::core, _WlzVertexP::d3, _WlzGreyValueWSpace::gPtr, _WlzGreyValueWSpace::gType, _WlzPropertyList::list, _WlzPoints::maxPoints, _WlzProperty::name, _WlzPoints::nPoints, _WlzObject::plist, _WlzPoints::points, _WlzValues::pts, _WlzDomain::pts, _WlzObject::values, _WlzDVertex3::vtX, _WlzDVertex3::vtY, _WlzPointValues::vType, _WlzDVertex3::vtZ, WLZ_DGTENSOR_FEATURE_DETJAC, WLZ_DGTENSOR_FEATURE_EIGENVAL, WLZ_DGTENSOR_FEATURE_EIGENVEC, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_PARAM_DATA, WLZ_GREY_DOUBLE, WLZ_POINTS, WlzAssignPropertyList(), WlzFreeObj(), WlzFreeProperty(), WlzFreePropertyList(), WlzFreePropertyListEntry(), WlzGreyValueFreeWSp(), WlzGreyValueGet(), WlzGreyValueMakeWSp(), WlzMakeMain(), WlzMakeNameProperty(), WlzMakePointValues(), and WlzMakePropertyList().

Referenced by WlzDGTensorFeatures().

WlzErrorNum WlzTensorSmooth	(	WlzObject *	obj,
		WlzDVertex3	smooth
	)

Smooths the (possibly) non-scalar features of the given object in place by applying a Gaussian filter with the given sigma values (sigma value <~ 0.0 implies no filtering in the corresponding direction.

Returns

Woolz error code.

Parameters

obj	Given object with values to smooth.
smooth	Gaussian filter sigma values.

References ALG_PAD_END, _WlzValues::core, _WlzDomain::core, _WlzObject::domain, _WlzValues::t, _WlzObject::type, _WlzCoreValues::type, _WlzObject::values, _WlzTiledValues::vpe, _WlzDVertex3::vtX, _WlzDVertex3::vtY, _WlzDVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_VALUES_NULL, WlzFreeObj(), WlzGaussFilter(), WlzGreyTableIsTiled(), WlzGreyTypeFromObj(), WlzTensorGetComponent(), and WlzTensorSetComponent().

Referenced by WlzDGTensorSDFeature().

WlzObject* WlzTensorGetComponent	(	WlzObject *	tObj,
		int	cpt,
		WlzErrorNum *	dstErr
	)

Extracts a single value component from a (possibly) non-scalar object and creates an object with a non-tiled value table which is returned. This function may also be used to convert a tiled value object to a non-tiled value object.

Returns

New object containing a single component of the given object.

Parameters

tObj	Given object (possibly) with non-scalar values.
cpt	The component index which must be in the range [0-(v - 1)] where v is the values per element.
dstErr	Destination error pointer, may be NULL.

References _WlzValues::core, _WlzDomain::core, _WlzObject::domain, _WlzValues::t, _WlzObject::type, _WlzCoreValues::type, _WlzObject::values, _WlzTiledValues::vpe, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_PARAM_DATA, WLZ_ERR_VALUES_NULL, WLZ_GREY_ERROR, WLZ_GREY_TAB_RAGR, WlzFreeObj(), WlzGetBackground(), WlzGreyTableIsTiled(), WlzGreyTableTypeToGreyType(), WlzGreyValueTableType(), and WlzNewObjectValues().

Referenced by WlzTensorSmooth().

WlzErrorNum WlzTensorSetComponent	(	WlzObject *	tObj,
		WlzObject *	fObj,
		int	cpt
	)

Sets a single value component in a (possibly) non-scalar object using scalar values of the second given object.

Returns

Woolz error code.

Parameters

tObj	Given object (possibly) with non-scalar values which is to have component values set.
fObj	Given scalar valued object with values to be transfered to the first given object.
cpt	The component index which must be in the range [0-(v - 1)] where v is the values per element of the first object.

References _WlzValues::core, _WlzDomain::core, _WlzObject::domain, _WlzValues::t, _WlzObject::type, _WlzCoreValues::type, _WlzObject::values, _WlzTiledValues::vpe, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_PARAM_DATA, WLZ_ERR_VALUES_NULL, and WlzGreyTableIsTiled().

Referenced by WlzTensorSmooth().

WlzObject* WlzCMeshDGTensor	(	WlzObject *	cObj,
		int	invert,
		WlzErrorNum *	dstErr
	)

Given a conforming mesh transform this function computes the displacement gradient tensor for each of it's valid elements. Given displacement \(\vec{u}(\vec{r})\) with position vector \(\vec{r}\) which maps a point from a space \(\vec{x}\) to a space \(\vec{u}\) the displacement gradient tensor is defined in 3D as

\[ { \newcommand{\pd}[2]{\frac{\partial #1}{\partial #2}} u_{i,j} = \left [ \begin{array}{ccc} \pd{u_0}{x_0} & \pd{u_0}{x_1} & \pd{u_0}{x_2} \\ \pd{u_1}{x_0} & \pd{u_1}{x_1} & \pd{u_1}{x_2} \\ \pd{u_2}{x_0} & \pd{u_2}{x_1} & \pd{u_2}{x_2} \end{array} \right] } \]

with

\[ \Delta r_i = u_{ij} r_j \]

where \(\vec{u} = \left[u_0, u_1, u_2\right]^T\) and \(\Delta \vec{r} = \left[x_0, x_1, x_2\right]^T\). The displacement gradient tensor matrix is just the rotation and independent scaling part of the affine transform that displaces the element.

Returns

Conforming mesh object with tensor values attached to elements or NULL on error.

Parameters

cObj	Given conforming mesh object.
invert	Invert if non-zero, by default the tensors are computed for the transform from the mesh to the displaced mesh.
dstErr	Destination error pointer, may be NULL.

References _WlzValues::core, _WlzDomain::core, _WlzObject::domain, _WlzObject::type, _WlzObject::values, WLZ_CMESH_2D, WLZ_CMESH_3D, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_UNIMPLEMENTED, and WLZ_ERR_VALUES_NULL.

Referenced by WlzCMeshStrainTensor().

WlzObject* WlzCMeshDGTensorAtPts	(	WlzObject *	cObj,
		int	invert,
		WlzDVertex3	sd,
		int	dither,
		WlzErrorNum *	dstErr
	)

Given a conforming mesh transform this function computes the displacement gradient tensor at regular cartesian grid sample points throughout the mesh. The tensor values at the sample points are computed at each point by computing an iverse distance weighted least squares general affine transform for the ring of nodes surrounding the closest node. See WlzCMeshDGTensor() for the description of the tensor.

Returns

Points object with tensor values at the point locations or NULL on error.

Parameters

cObj	Given conforming mesh object.
invert	Invert if non-zero, by default the tensors are computed for the transform from the mesh to the displaced mesh.
sd	Sample distance.
dither	Dither the sample locations.
dstErr	Destination error pointer, may be NULL.

References _WlzValues::core, _WlzDomain::core, _WlzObject::domain, _WlzObject::type, _WlzObject::values, _WlzDVertex3::vtX, _WlzDVertex3::vtY, _WlzDVertex3::vtZ, WLZ_CMESH_2D, WLZ_CMESH_3D, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_PARAM_DATA, WLZ_ERR_UNIMPLEMENTED, WLZ_ERR_VALUES_NULL, and WLZ_MESH_TOLERANCE.

Referenced by WlzCMeshStrainTensorAtPts().

WlzObject* WlzCMeshStrainTensor	(	WlzObject *	cObj,
		int	invert,
		WlzErrorNum *	dstErr
	)

Given a conforming mesh transform this function computes the strain tensor for each of it's valid elements. This function uses WlzCMeshDGTensor() to compute the displacement gradient tensor and the derives the strain tensor \(e_{ij}\) from this using:

\[ e_{ij} = \frac{1}{2} (u_{ij} + u_{ji}) \]

.

Returns

Conforming mesh object with tensor values attached to elements or NULL on error.

Parameters

cObj	Given conforming mesh object.
invert	Invert if non-zero, by default the tensors are computed for the transform from the mesh to the displaced mesh.
dstErr	Destination error pointer, may be NULL.

References _WlzObject::type, WLZ_CMESH_2D, WLZ_CMESH_3D, WLZ_ERR_NONE, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_UNIMPLEMENTED, WlzCMeshDGTensor(), and WlzFreeObj().

Referenced by WlzCMeshExpansion().

WlzObject* WlzCMeshStrainTensorAtPts	(	WlzObject *	cObj,
		int	invert,
		WlzDVertex3	sd,
		int	dither,
		WlzErrorNum *	dstErr
	)

Given a conforming mesh transform this function computes the displacement gradient tensor at regular cartesian grid sample points throughout the mesh. The tensor values at the sample points are computed using WlzCMeshDGTensorAtPts(). The strain tensor is then computed from the displacement gradient tensor as for WlzCMeshStrainTensor().

Returns

Points object with tensor values or NULL on error.

Parameters

cObj	Given conforming mesh object.
invert	Invert if non-zero, by default the tensors are computed for the transform from the mesh to the displaced mesh.
sd	Sample distance.
dither	Dither the sample locations.
dstErr	Destination error pointer, may be NULL.

References AlcVectorItemGet(), AlgMatrixLUDetermRaw(), AlgMatrixRSEigen(), AlgRandSeed(), AlgRandZigNormal(), _AlgMatrixRect::array, _WlzIndexedValues::attach, _WlzCMesh3D::bBox, _WlzDomain::cm3, _WlzValues::core, _WlzDomain::core, _WlzVertexP::d3, _WlzGreyP::dbp, _WlzIndexedValues::dim, _WlzObject::domain, _WlzPlaneDomain::domains, _WlzCMeshRes::elm, _WlzGreyP::flp, _WlzGreyValueWSpace::gPtr, _WlzGreyValueWSpace::gType, _WlzCMeshElm3D::idx, _WlzGreyP::inp, _WlzIntervalWSpace::lftpos, _WlzIntervalWSpace::linpos, _WlzGreyP::lnp, _WlzCMeshEntRes::maxEnt, _WlzPoints::nPoints, _WlzDomain::p, _WlzGreyWSpace::pixeltype, _WlzPlaneDomain::plane1, _WlzPoints::points, _WlzCMeshNod3D::pos, _WlzValues::pts, _WlzDomain::pts, _WlzIndexedValues::rank, _AlgMatrix::rect, _WlzCMesh3D::res, _WlzGreyP::rgbp, _WlzIntervalWSpace::rgtpos, _WlzGreyP::shp, _WlzObject::type, _WlzCoreValues::type, _WlzGreyWSpace::u_grintptr, _WlzGreyP::ubp, _WlzVertexP::v, _WlzObject::values, _WlzVoxelValues::values, _WlzPointValues::values, _WlzCMeshEntRes::vec, _WlzValues::vox, _WlzIVertex3::vtX, _WlzDVertex3::vtX, _WlzIVertex3::vtY, _WlzDVertex3::vtY, _WlzIndexedValues::vType, _WlzPointValues::vType, _WlzIVertex3::vtZ, _WlzDVertex3::vtZ, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_CLAMP, WLZ_CLAMP_DOUBLE_TO_GREYP, WLZ_CMESH_2D, WLZ_CMESH_3D, WLZ_CMESH_ELM3D_GET_NODE_0, WLZ_CMESH_ELM3D_GET_NODE_1, WLZ_CMESH_ELM3D_GET_NODE_2, WLZ_CMESH_ELM3D_GET_NODE_3, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_EOO, WLZ_ERR_NONE, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_UNIMPLEMENTED, WLZ_ERR_VALUES_TYPE, WLZ_GREY_DOUBLE, WLZ_GREY_FLOAT, WLZ_GREY_INT, WLZ_GREY_LONG, WLZ_GREY_RGBA, WLZ_GREY_SHORT, WLZ_GREY_UBYTE, WLZ_INDEXED_VALUES, WLZ_MESH_TOLERANCE_SQ, WLZ_POINTS, WLZ_POINTS_3D, WLZ_VALUE_ATTACH_ELM, WLZ_VALUE_ATTACH_NOD, WlzAssignObject(), WlzCMeshDGTensorAtPts(), WlzCMeshElmEnclosingPos3D(), WlzCMeshTransformInvert(), WlzCMeshUpdateBBox3D(), WlzFreeDomain(), WlzFreeIndexedValues(), WlzFreeObj(), WlzFreePointValues(), WlzGeomTetraAffineSolve(), WlzGreyTableIsTiled(), WlzGreyValueFreeWSp(), WlzGreyValueGet(), WlzGreyValueMakeWSp(), WlzIndexedValueGet(), WlzInitGreyScan(), WlzMakeIndexedValues(), WlzMakeMain(), WlzMakePoints(), WlzMakePointValues(), WlzNextGreyInterval(), WlzPointValueGet(), WlzValueCopyGreyToGrey(), _WlzValues::x, _WlzDBox3::xMax, _WlzDBox3::xMin, _WlzDBox3::yMax, _WlzDBox3::yMin, _WlzDBox3::zMax, and _WlzDBox3::zMin.

WlzObject* WlzThinToPoints	(	WlzObject *	gObj,
		int	gThin,
		int	gStart,
		int	gInc,
		WlzErrorNum *	dstErr
	)

Extracts a points object in which the points are the centres of thinned regions of the input domain object. If the object has grey values and gThin is set then the object is erroded by successive thresholding while collecting all disconnected regions or if the object has no values the object is simply labeled to give a collection of disconnected regions. The disconnected regions are then eroded (morphologicaly) again collecting disconnected regions.

Returns

New Woolz points object.

Parameters

gObj	Given domain object, with or without values.
gThin	Use object grey values.
gStart	Initial threshold value for grey thinning.
gInc	Increment for grey thinning.
dstErr	Destination error pointer, may be NUll.

References AlcFree(), AlcHeapEntFree(), AlcHeapFree(), AlcHeapInsertEnt(), AlcHeapNew(), AlcHeapTop(), _WlzValues::core, _WlzDomain::core, _WlzObject::domain, _WlzDomain::i, _WlzVertexP::i2, _WlzVertexP::i3, _WlzGreyV::inv, _AlcHeap::nEnt, _WlzPoints::nPoints, _WlzThinToPointsHeapEntry::obj, _WlzDomain::p, _WlzPoints::points, _WlzThinToPointsHeapEntry::priority, _WlzDomain::pts, _WlzThinToPointsHeapEntry::size, _WlzThinToPointsHeapEntry::thr, _WlzPixelV::type, _WlzObject::type, _WlzVertexP::v, _WlzPixelV::v, _WlzObject::values, _WlzValues::vox, WLZ_26_CONNECTED, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_8_CONNECTED, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_ERR_PARAM_DATA, WLZ_GREY_INT, WLZ_POINTS, WLZ_POINTS_2I, WLZ_POINTS_3I, WLZ_THRESH_HIGH, WLZ_THRESH_LOW, WLZ_VTX_2_NINT, WLZ_VTX_3_NINT, WlzAssignObject(), WlzCentreOfMass2D(), WlzCentreOfMass3D(), WlzErosion(), WlzFreeDomain(), WlzFreeObj(), WlzLabel(), WlzMakeMain(), WlzMakePoints(), WlzStandardIntervalDomain(), WlzStandardPlaneDomain(), WlzThreshold(), and WlzVolume().

WlzVertexP WlzVerticesFromObj	(	WlzObject *	obj,
		WlzVertexP *	dstNr,
		int *	dstCnt,
		WlzVertexType *	dstType,
		WlzErrorNum *	dstErr
	)

Allocates a buffer which it fills with the vertices from the given object. If the object is not one of the types that is represented by vertices, eg polylines, boundlists, contours ..., then this may result in a very large number of vertices, with for example one per voxel. Normals will only be allocated and set for objects represented by vertices, eg there will be no normals for voxel based objects.

Returns

Allocated vertices.

Parameters

obj	Given polygon domain object.
dstNr	Destination ptr for normals. The normals will always be either WlzDVertex2 or WlzDVertex3. May be NULL.
dstCnt	Destination ptr for the number of vertices. Can NOT be NULL.
dstType	Destination ptr for the type of vertices. Can NOT be NULL.
dstErr	Destination error pointer, may be NULL.

References _WlzDomain::b, _WlzDomain::core, _WlzDomain::ctr, _WlzObject::domain, _WlzVertexP::i2, _WlzVertexP::i3, _WlzContour::model, _WlzDomain::poly, _WlzObject::type, _WlzVertexP::v, WLZ_2D_DOMAINOBJ, WLZ_2D_POLYGON, WLZ_3D_DOMAINOBJ, WLZ_BOUNDLIST, WLZ_CONTOUR, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_VERTEX_I2, WLZ_VERTEX_I3, WlzVerticesFromGM(), WlzVerticesFromObj2I(), and WlzVerticesFromObj3I().

Referenced by WlzGeometryTrackUpAndDown_s(), WlzObjToConvexHull(), WlzRegICPObjs(), WlzRegICPObjsGrd(), WlzRegICPObjWSD2D(), WlzSnapFit(), and WlzVerticesBuildTree().

WlzVertexP WlzVerticesFromObjBnd	(	WlzObject *	obj,
		int *	dstCnt,
		WlzVertexType *	dstType,
		WlzErrorNum *	dstErr
	)

Extracts all vertices that lie on the boundary of the given objects domain.

Returns

Allocated vertices.

Parameters

obj	Given 2D or 3D domain object.
dstCnt	Destination ptr for the number of vertices.
dstType	Destination ptr for the type of vertices, which will always be integer.
dstErr	Destination error pointer, may be NULL.

References _WlzDomain::core, _WlzObject::domain, _WlzVertexP::i2, _WlzVertexP::i3, _WlzObject::type, _WlzVertexP::v, WLZ_2D_DOMAINOBJ, WLZ_3D_DOMAINOBJ, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WLZ_VERTEX_I2, WLZ_VERTEX_I3, WlzVerticesFromObjBnd2I(), and WlzVerticesFromObjBnd3I().

WlzErrorNum WlzVerticesFromObjBnd2I	(	WlzObject *	obj,
		int *	dstNVtx,
		WlzIVertex2 **	dstVtx
	)

Extracts all vertices that lie on the boundary of the given 2D domain object's domain.

Returns

Error code.

Parameters

obj	Given 2D domain object.
dstNVtx	Destination ptr for the number of vertices, MUST NOT be NULL.
dstVtx	Destination ptr for the vertices, MUST NOT be NULL.

References AlcMalloc(), _WlzDomain::b, _WlzObject::domain, _WlzVertexP::i2, _WlzVertexP::v, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_VERTEX_I2, WlzFreeObj(), and WlzObjToBoundary().

Referenced by WlzVerticesFromObjBnd().

WlzErrorNum WlzVerticesFromObjBnd3I	(	WlzObject *	obj,
		int *	dstNVtx,
		WlzIVertex3 **	dstVtx
	)

Extracts all vertices that lie on the boundary of the given 3D domain object's domain.

Returns

Error code.

Parameters

obj	Given 3D domain object.
dstNVtx	Destination ptr for the number of vertices, MUST NOT be NULL.
dstVtx	Destination ptr for the vertices, MUST NOT be NULL.

References _WlzDomain::core, _WlzObject::domain, _WlzObject::type, WLZ_3D_DOMAINOBJ, WLZ_6_CONNECTED, WLZ_ERR_DOMAIN_NULL, WLZ_ERR_NONE, WLZ_ERR_OBJECT_NULL, WLZ_ERR_OBJECT_TYPE, WlzDiffDomain(), WlzErosion(), WlzFreeObj(), and WlzVerticesFromObj3I().

Referenced by WlzContourRBFBndObj3D(), and WlzVerticesFromObjBnd().

WlzErrorNum WlzVerticesFromObj2I	(	WlzObject *	obj,
		int *	dstNVtx,
		WlzIVertex2 **	dstVtx
	)

Extracts all vertices that lie within the given 2D domain object's domain.

Returns

Error code.

Parameters

obj	Given 2D domain object.
dstNVtx	Destination ptr for the number of vertices, MUST NOT be NULL.
dstVtx	Destination ptr for the vertices, MUST NOT be NULL.

References AlcMalloc(), _WlzIntervalWSpace::lftpos, _WlzIntervalWSpace::linpos, _WlzIntervalWSpace::rgtpos, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_EOO, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_RASTERDIR_ILIC, WlzArea(), WlzInitRasterScan(), and WlzNextInterval().

Referenced by WlzMarkerLattice(), WlzPointsFromDomObj(), WlzVerticesFromObj(), and WlzVerticesFromObj3I().

WlzErrorNum WlzVerticesFromObj3I	(	WlzObject *	obj,
		int *	dstNVtx,
		WlzIVertex3 **	dstVtx
	)

Extracts all vertices that lie within the given 3D domain object's domain.

Returns

Error code.

Parameters

obj	Given 3D domain object.
dstNVtx	Destination ptr for the number of vertices, MUST NOT be NULL.
dstVtx	Destination ptr for the vertices, MUST NOT be NULL.

References AlcFree(), AlcMalloc(), _WlzValues::core, _WlzVertexP::d2, _WlzObject::domain, _WlzPlaneDomain::domains, _WlzVertexP::f2, _WlzVertexP::i2, _WlzPolygonDomain::nvertices, _WlzDomain::p, _WlzPlaneDomain::plane1, _WlzBoundList::poly, _WlzPolygonDomain::type, _WlzKrigModelFn::type, _WlzVertexP::v, _WlzIVertex2::vtX, _WlzPolygonDomain::vtx, WLZ_2D_DOMAINOBJ, WLZ_ERR_DOMAIN_DATA, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_POLYGON_DOUBLE, WLZ_POLYGON_FLOAT, WLZ_POLYGON_INT, WLZ_VERTEX_D2, WLZ_VERTEX_F2, WLZ_VERTEX_I2, WlzFreeObj(), WlzMakeMain(), WlzValueCopyDVertexToDVertex(), WlzValueCopyFVertexToFVertex(), WlzValueCopyIVertexToIVertex(), WlzVerticesFromObj2I(), and WlzVolume().

Referenced by WlzMarkerLattice(), WlzPointsFromDomObj(), WlzVerticesFromObj(), and WlzVerticesFromObjBnd3I().

WlzVertexP WlzVerticesFromGM	(	WlzGMModel *	model,
		WlzVertexP *	dstNr,
		int **	dstVId,
		int *	dstCnt,
		WlzVertexType *	dstType,
		WlzErrorNum *	dstErr
	)

Allocates a buffer which it fills with the vertices from a geometric model.

Returns

Allocated vertices.

Parameters

model	Given geometric model.
dstNr	Destination ptr for normals, may be NULL.
dstVId	Destination ptr for the GM vertex indicies, may be NULL.
dstCnt	Destination ptr for the number of vertices.
dstType	Destination ptr for the type of vertices.
dstErr	Destination error pointer, may be NULL.

References _WlzGMModel::type, _WlzVertexP::v, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_GMMOD_2D, WLZ_GMMOD_2I, WLZ_GMMOD_2N, WLZ_GMMOD_3D, WLZ_GMMOD_3I, and WLZ_GMMOD_3N.

Referenced by WlzDistMetricDirGM(), WlzDistMetricGM(), WlzMatchICPCtr(), and WlzVerticesFromObj().

WlzVertexP WlzDVerticesFromGM	(	WlzGMModel *	model,
		int *	dstCnt,
		WlzVertexType *	dstType,
		WlzErrorNum *	dstErr
	)

Allocates a buffer which it fills with either 2D or 3D double precission vertices from the geometric model. The indicies of the vertices in the buffer are the same as the indices of the vertices in the model.

Returns

Allocated vertices.

Parameters

model	Given geometric model.
dstCnt	Destination ptr for the number of vertices.
dstType	Destination ptr for the type of vertices.
dstErr	Destination error pointer, may be NULL.

References AlcMalloc(), AlcVectorItemGet(), _WlzVertexP::d2, _WlzVertexP::d3, _WlzGMVertex::geo, _WlzGMResource::numElm, _WlzGMResource::numIdx, _WlzGMModel::res, _WlzGMModel::type, _WlzVertexP::v, _WlzGMResource::vec, _WlzGMModelR::vertex, _WlzGMVertexGU::vg2D, _WlzGMVertexGU::vg2I, _WlzGMVertexGU::vg3D, _WlzGMVertexGU::vg3I, _WlzIVertex2::vtX, _WlzDVertex2::vtX, _WlzIVertex3::vtX, _WlzDVertex3::vtX, _WlzGMVertexG2I::vtx, _WlzGMVertexG2D::vtx, _WlzGMVertexG3I::vtx, _WlzGMVertexG3D::vtx, _WlzIVertex2::vtY, _WlzDVertex2::vtY, _WlzIVertex3::vtY, _WlzDVertex3::vtY, _WlzIVertex3::vtZ, _WlzDVertex3::vtZ, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_GMMOD_2D, WLZ_GMMOD_2I, WLZ_GMMOD_2N, WLZ_GMMOD_3D, WLZ_GMMOD_3I, WLZ_GMMOD_3N, WLZ_VERTEX_D2, and WLZ_VERTEX_D3.

Referenced by WlzGMFilterGeomLPLM().

WlzVertexP WlzDVerticesFromCMesh	(	WlzCMeshP	mesh,
		int *	dstCnt,
		WlzVertexType *	dstType,
		int	skip,
		WlzErrorNum *	dstErr
	)

Allocates a buffer which it fills with either 2D or 3D double precission vertices from the conforming mesh. The indicies of the vertices in the buffer are the same as the indices of the vertices in the model unless the skip non-valid nodes flag is set..

Returns

Allocated vertices.

Parameters

mesh	Given mesh.
dstCnt	Destination ptr for the number of vertices.
dstType	Destination ptr for the type of vertices.
skip	Skip non-valid nodes if non-zero.
dstErr	Destination error pointer, may be NULL.

References _WlzVertexP::d2, _WlzVertexP::d3, _WlzCMeshP::m2, _WlzCMeshP::m2d5, _WlzCMeshP::m3, _WlzCMesh2D::type, _WlzVertexP::v, _WlzCMeshP::v, WLZ_CMESH_2D, WLZ_CMESH_2D5, WLZ_CMESH_3D, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_NONE, WLZ_VERTEX_D2, and WLZ_VERTEX_D3.

Referenced by WlzCMeshLPFilterLM().

int WlzVertexQSortFnI2	(	void *	p0,
		void *	p1
	)

Function for AlgSort() to sort WlzIVertex2 vertices so that they have increasing Y then X.

Returns

Signed sort value.

Parameters

p0	First vertex pointer.
p1	Second vertex pointer.

References _WlzIVertex2::vtX, and _WlzIVertex2::vtY.

int WlzVertexQSortFnI3	(	void *	p0,
		void *	p1
	)

Function for AlgSort() to sort WlzIVertex3 vertices so that they have increasing z then Y then X.

Returns

Signed sort value.

Parameters

p0	First vertex pointer.
p1	Second vertex pointer.

References _WlzIVertex3::vtX, _WlzIVertex3::vtY, and _WlzIVertex3::vtZ.

int WlzVertexHeapSortIdxFnI2	(	void *	data,
		int *	idx,
		int	id0,
		int	id1
	)

Function for AlgHeapSortIdx() to sort WlzIVertex2 vertices so that they have increasing Y then X.

Returns

Signed sort value.

Parameters

data	Vertex array.
idx	Vertex index array.
id0	First index.
id1	Second index.

References _WlzIVertex2::vtX, and _WlzIVertex2::vtY.

int WlzVertexHeapSortIdxFnI3	(	void *	data,
		int *	idx,
		int	id0,
		int	id1
	)

Function for AlgHeapSortIdx() to sort WlzIVertex3 vertices so that they have increasing Z then Y then X.

Returns

Signed sort value.

Parameters

data	Vertex array.
idx	Vertex index array.
id0	First index.
id1	Second index.

References _WlzIVertex3::vtX, _WlzIVertex3::vtY, and _WlzIVertex3::vtZ.

Referenced by WlzConvexHullFromVtx3().

int WlzVertexHeapSortIdxFnD2	(	void *	data,
		int *	idx,
		int	id0,
		int	id1
	)

Function for AlgHeapSortIdx() to sort WlzDVertex2 vertices so that they have increasing Z then Y then X.

Returns

Signed sort value.

Parameters

data	Vertex array.
idx	Vertex index array.
id0	First index.
id1	Second index.

References _WlzDVertex2::vtX, and _WlzDVertex2::vtY.

int WlzVertexHeapSortIdxFnD3	(	void *	data,
		int *	idx,
		int	id0,
		int	id1
	)

Function for AlgHeapSortIdx() to sort WlzDVertex3 vertices so that they have increasing Z then Y then X.

Returns

Signed sort value.

Parameters

data	Vertex array.
idx	Vertex index array.
id0	First index.
id1	Second index.

References AlcFree(), AlcMalloc(), AlcVectorItemGet(), _WlzGMVertexGU::core, _WlzVertexP::d2, _WlzVertexP::d3, _WlzGMVertexT::diskT, _WlzGMVertex::diskT, _WlzBoundList::down, _WlzVertexP::f2, _WlzGMVertex::geo, _WlzVertexP::i2, _WlzVertexP::i3, _WlzGMVertex::idx, _WlzCMeshNod2D::idx, _WlzCMeshNod2D5::idx, _WlzCMeshNod3D::idx, _WlzCMeshEntRes::maxEnt, _WlzGMVertexT::next, _WlzGMEdgeT::next, _WlzBoundList::next, _WlzCMeshRes::nod, _WlzGMVertexG2N::nrm, _WlzGMResource::numElm, _WlzCMeshEntRes::numEnt, _WlzPolygonDomain::nvertices, _WlzGMVertexT::parent, _WlzBoundList::poly, _WlzCMeshNod2D::pos, _WlzCMeshNod2D5::pos, _WlzCMeshNod3D::pos, _WlzGMVertexT::prev, _WlzGMEdgeT::prev, _WlzGMModel::res, _WlzCMesh2D::res, _WlzCMesh2D5::res, _WlzCMesh3D::res, _WlzGMCore::type, _WlzGMModel::type, _WlzPolygonDomain::type, _WlzKrigModelFn::type, _WlzVertexP::v, _WlzGMResource::vec, _WlzCMeshEntRes::vec, _WlzGMDiskT::vertex, _WlzGMModelR::vertex, _WlzGMDiskT::vertexT, _WlzGMEdgeT::vertexT, _WlzGMVertexGU::vg2D, _WlzGMVertexGU::vg2I, _WlzGMVertexGU::vg2N, _WlzGMVertexGU::vg3D, _WlzGMVertexGU::vg3I, _WlzIVertex2::vtX, _WlzDVertex2::vtX, _WlzDVertex3::vtX, _WlzGMVertexG2I::vtx, _WlzGMVertexG2D::vtx, _WlzGMVertexG3I::vtx, _WlzGMVertexG3D::vtx, _WlzPolygonDomain::vtx, _WlzIVertex2::vtY, _WlzDVertex2::vtY, _WlzDVertex3::vtY, _WlzDVertex3::vtZ, WLZ_ERR_DOMAIN_TYPE, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_GMELM_VERTEX_G2N, WLZ_GMMOD_2D, WLZ_GMMOD_2I, WLZ_GMMOD_2N, WLZ_GMMOD_3I, WLZ_POLYGON_DOUBLE, WLZ_POLYGON_FLOAT, WLZ_POLYGON_INT, WLZ_VERTEX_D2, WLZ_VERTEX_D3, WLZ_VERTEX_F2, WLZ_VERTEX_I2, WLZ_VERTEX_I3, WLZ_VTX_2_ADD, WLZ_VTX_2_LENGTH, WLZ_VTX_2_SCALE, WLZ_VTX_2_SUB, WlzGeomTriangleSnArea2(), WlzGMVertexNormal3D(), WlzValueCopyDVertexToDVertex(), WlzValueCopyFVertexToFVertex(), and WlzValueCopyIVertexToIVertex().

Referenced by WlzConvexHullFromVtx3().

AlcKDTTree* WlzVerticesBuildTree	(	WlzVertexType	vType,
		int	nV,
		WlzVertexP	vtx,
		int *	shfBuf,
		WlzErrorNum *	dstErr
	)

Allocates and populates a k-D tree from the given vertices. The vertices are either WlzDVertex2 orWlzDVertex3.

Returns

Woolz error code

Parameters

vType	Type of vertices.
nV	Number of vertices.
vtx	The vertices.
shfBuf	Workspace with at least nV ints used to shuffle vertices for randomized input to the K-D tree.
dstErr	Destination error pointer, may be NULL.

References ALC_ER_NONE, ALC_POINTTYPE_DBL, AlcFree(), AlcKDTInsert(), AlcKDTTreeNew(), AlgShuffleIdx(), _WlzVertexP::d2, _WlzVertexP::d3, getopt(), _AlcKDTNode::idx, main(), optarg, opterr, optind, optopt, _WlzVertexP::v, _WlzDVertex2::vtX, _WlzDVertex3::vtX, _WlzDVertex2::vtY, _WlzDVertex3::vtY, _WlzDVertex3::vtZ, WLZ_ERR_MEM_ALLOC, WLZ_ERR_NONE, WLZ_ERR_PARAM_TYPE, WLZ_ERR_WRITE_EOF, WLZ_VERTEX_D2, WLZ_VERTEX_D3, WlzAssignObject(), WlzFreeObj(), WlzReadObj(), and WlzVerticesFromObj().

Referenced by WlzDistMetricDirVertex2D(), WlzDistMetricDirVertex3D(), WlzGeometryTrackUpAndDown_s(), WlzMatchICPCtr(), and WlzRegICPVerticesWSD2D().