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EMAGE:10115

Msc musculin ( MGI:1333884)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10115 EMAGE:10115 EMAGE:10115 EMAGE:10115 EMAGE:10115
"Pseudo-wholemount" of euxassay_000008. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_000008_01 euxassay_000008_02 euxassay_000008_03 euxassay_000008_04
EMAGE:10115 EMAGE:10115 EMAGE:10115 EMAGE:10115 EMAGE:10115
euxassay_000008_05 euxassay_000008_06 euxassay_000008_07 euxassay_000008_08 euxassay_000008_09
EMAGE:10115 EMAGE:10115 EMAGE:10115 EMAGE:10115 EMAGE:10115
euxassay_000008_10 euxassay_000008_11 euxassay_000008_12 euxassay_000008_13 euxassay_000008_14
EMAGE:10115 EMAGE:10115 EMAGE:10115 EMAGE:10115 EMAGE:10115
euxassay_000008_15 euxassay_000008_16 euxassay_000008_17 euxassay_000008_18 euxassay_000008_19
EMAGE:10115 EMAGE:10115 EMAGE:10115 EMAGE:10115 EMAGE:10115
euxassay_000008_20 euxassay_000008_21 euxassay_000008_22 euxassay_000008_23 euxassay_000008_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10115Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10115_wholemount_strong.wlz
10115_wholemount_moderate.wlz
10115_wholemount_weak.wlz
10115_wholemount_possible.wlz
10115_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10115_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T1777
Entity Detected:Msc, musculin ( MGI:1333884)
Sequence:sense strand is shown

>T1777
TGGCCTCGAGCCAGAATTCGGACGAGGGCTTTAGCTCTGATCACAACCCCCTGCCTGCTATCTGAGTCCA
GTGCAGAAACGGGTTGGTTTTGAAGCTAATCTTGATTGCCTTGTGGTTGATGGCAAGGTCCTGCACAGCC
AGGTCCTTCTGTGACCGTGGATGAGAGCTGTTTCCCAGCACTAGAAAGAAGGCCGGCATTAGAGCTCTTC
GGGGGCCTGTCACTAAGGGCAGTGTTGCTACAGACAGTGGCATACTCTTCCT
Notes:The probe template was PCR amplified from IMAGE:493457 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:493457 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:10113 same embryo
 EMAGE:10114 same embryo
 EMAGE:10116 same embryo
 EMAGE:10112 same embryo
 EurExpress:euxassay_000008 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS