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EMAGE:10338

Dicer1 Dicer1, Dcr-1 homolog (Drosophila) ( MGI:2177178)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10338 EMAGE:10338 EMAGE:10338 EMAGE:10338 EMAGE:10338
"Pseudo-wholemount" of euxassay_018948. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018948_01 euxassay_018948_02 euxassay_018948_03 euxassay_018948_04
EMAGE:10338 EMAGE:10338 EMAGE:10338 EMAGE:10338 EMAGE:10338
euxassay_018948_05 euxassay_018948_06 euxassay_018948_07 euxassay_018948_08 euxassay_018948_09
EMAGE:10338 EMAGE:10338 EMAGE:10338 EMAGE:10338 EMAGE:10338
euxassay_018948_10 euxassay_018948_11 euxassay_018948_12 euxassay_018948_13 euxassay_018948_14
EMAGE:10338 EMAGE:10338 EMAGE:10338 EMAGE:10338
euxassay_018948_15 euxassay_018948_16 euxassay_018948_17 euxassay_018948_18

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10338Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10338_wholemount_strong.wlz
10338_wholemount_moderate.wlz
10338_wholemount_weak.wlz
10338_wholemount_possible.wlz
10338_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10338_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
telencephalon ventricular layer
weak weak
regionalweak expression: see section 01 02 16 17 18
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 07 12 13 weak expression: see section 05 06 08 14 15 16
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50300
Entity Detected:Dicer1, Dicer1, Dcr-1 homolog (Drosophila) ( MGI:2177178)
Sequence:sense strand is shown

>T50300
AAGCAGCCAACAAAAGAGCCTTTCAGGGAGCTGTGCCGCTCCAGTTGGCCCACGCTCCTCTGCAGGGAAA
GACTTGGAGTACGGCTGCCTGAAGATCCCACCGAGGTGCATGTTTGACCATCCAGACGCAGAGAAAACCC
TCAACCACCTGATATCTGGGTTTGAAACTTTTGAGAAGAAAATTAACTATAGATTCAAGAATAAGGCTTA
TCTTCTGCAGGCTTTTACACACGCCTCCTACCACTACAACACTATCACTGATTGTTACCAGCGCTTAGAA
TTCCTGGGAGATGCGATTTTGGACTACCTCATAACCAAGCACCTTTATGAAGACCCACGGCAGCATTCTC
CAGGGGTCTTGACTGACTTGCGCTCTGCCCTTGTCAATAACACCATCTTTGCATCATTGGCTGTGAAGTA
TGACTACCACAAGTACTTTAAAGCTGTCTCTCCTGAGCTCTTTCATGTTATTGATGACTTTGTGAAGTTT
CAGCTTGAGAAGAATGAAATGCAAGGAATGGACTCTGAGCTTAGGAGATCCGAGGAGGATGAGGAGAAAG
AAGAGGATATCGAAGTCCCCAAGGCCATGGGGGACATTTTTGAGTCTCTTGCTGGTGCCATTTATATGGA
CAGTGGGATGTCTCTGGAGGTGGTCTGGCAGGTGTACTATCCGATGATGCAGCCTCTAATAGAAAAGTTT
TCTGCAAATGTGCCTCGTTCTCCAGTGAGAGAATTGCTCGAGATGGAACCAGAAACTGCCAAGTTTAGCC
CAGCGGAGAGAACTTATGATGGAAAGGTCAGAGTCACCGTGGAAGTGGTGGGAAAGGGGAAATTTAAAGG
TGTTGGCCGGAGCTACAGGATCGCCAAGTCTGCTGCAGCACGAAGGGCCCTCCGCAGCCTCAAAGCTAAC
CAGCCTCAGG
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:AAGCAGCCAACAAAAGAG; Reverse Primer - name:unspecified, sequence:CCTGAGGCTGGTTAGCTTTG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:MGI:4824307 same experiment
 EurExpress:euxassay_018948 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS