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EMAGE:1041

Pax9 paired box gene 9 ( MGI:97493)
TS15 (9.75 dpc)
in situ hybridisation

Data Images
EMAGE:1041
Figure 7G of Leitges et al., 2000 [PMID:10804169] Copyright: This image is from Development and is displayed with the permission of The Company of Biologists Ltd. who owns the copyright.

Expression pattern clarity: two stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:1041Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
1041_wholemount_strong_3D_1.wlz
1041_wholemount_moderate_3D_1.wlz
1041_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:1041_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
trunk somite
strong strong
regionalExpression upregulated in posterior somite half. Expression detected in the ventrolateral sclerotome
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:1326918
Entity Detected:Pax9, paired box gene 9 ( MGI:97493)
Notes:The Pax9 probe used in this study by Leitges et al., 2000 [PMID:10804169] was previously described by Neubuser et al., 1995 [PMID:7649395] as their probe for wholemounts ie. "a 1370-bp EcoRI/SspI fragment, cloned into pBlueskript II (KS+)." The sequence referred to is X84000.1, though EcoRI does not cut this sequence. Exact endpoints undefined.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:129P2/OlaHsd x NMRI
Age:9.75 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Leitges et al., 2000 [PMID:10804169] Indexed by GXD, Spatially Mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:10804169] Leitges M, Neidhardt L, Haenig B, Herrmann BG, Kispert A 2000 The paired homeobox gene Uncx4.1 specifies pedicles, transverse processes and proximal ribs of the vertebral column. Development (127):2259-67
 [ doi:10.1006/dbio.1995.1248] [ PMID:7649395] Neubuser A, Koseki H, Balling R 1995 Characterization and developmental expression of Pax9, a paired-box-containing gene related to Pax1. Dev Biol (1995):701-16
Links:MGI:1859382 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI