EMAGE mouse gene expression spatial database

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EMAGE:10595

Lgals3bp lectin, galactoside-binding, soluble, 3 binding protein ( MGI:99554)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_000943. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_000943_01	euxassay_000943_02	euxassay_000943_03	euxassay_000943_04

euxassay_000943_05	euxassay_000943_06	euxassay_000943_07	euxassay_000943_08	euxassay_000943_09

euxassay_000943_10	euxassay_000943_11	euxassay_000943_12	euxassay_000943_13	euxassay_000943_14

euxassay_000943_15	euxassay_000943_16	euxassay_000943_17	euxassay_000943_18	euxassay_000943_19

euxassay_000943_20	euxassay_000943_21	euxassay_000943_22	euxassay_000943_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10595_wholemount_strong.wlz

10595_wholemount_moderate.wlz

10595_wholemount_weak.wlz

10595_wholemount_possible.wlz

10595_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10595_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

thymus primordium

moderate

homogeneous

moderate expression: see section 14 15 weak expression: see section 16

foregut-midgut junction

strong

regional

strong expression: see section 13 14 15 16 17 18 19 20

integumental system

moderate

homogeneous

moderate expression: see section 13

stomach

weak

regional

weak expression: see section 03 04 05 06 07 08 09 10 11 12

midgut

strong

regional

strong expression: see section 09 10 11 12 13 14 15 16 17

liver lobe

moderate

homogeneous

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T1044
Entity Detected:	Lgals3bp, lectin, galactoside-binding, soluble, 3 binding protein ( MGI:99554)
Sequence:	sense strand is shown >T1044 TCCTCNNACCTGTTGGCCTACTGGATTTTCCTGGGACGAGGCTGAGGAAAGCCACATGGTGGAGCTTTTC TCTGCTGAACAGTCTACAGAAGGCTTCCAGTTGCAGCCAGGAAGGAGGCTCCAGGACTGCCTTCAGCCAC TGCCTCGCTGCCTGAGGGACAGTTGAGTCCCTCTCTTGCTCCCAGGGTTGGGCTTCTAGGCCAGGCAATG GCTCTCCTGTGGCTCCTCTCTGTGTTCTTGCTGGTTCCAGGGACTCAAGGTACAGAAGATGGAGACATGC GCTTGGTTAACGGGGCCTCAGCCAATGAGGGCCGCGTGGAGATCTTCTACAGAGGCCGGTGGCGGACAGT GTGTGACAACCTCTGGAACCTTTTGGATGCCCACGTCGTCTGCCGGGCCCTGGGCTATGAGAATGCCACC CAAGCACTGGGCAGAGCTGCCTTCGGGCCAGGAAAGGGACCGATCATGCTGGATGAGGTGGAATGTACAG GGACCGAGTCCTCACTGGCCAGTTGCAGATCCCTGGGTTGGATGGTGAGCCGCTGTGGGCAC
Notes:	The probe template was PCR amplified from IMAGE:2088205 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2088205 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10597 same embryo
	EMAGE:10598 same embryo
	EMAGE:10594 same embryo
	EMAGE:10593 same embryo
	EMAGE:10596 same embryo
	EurExpress:euxassay_000943 same experiment
	MGI:4825907 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source