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EMAGE:10623

Sds serine dehydratase ( MGI:98270)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10623
euxassay_003269_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10623Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10623_wholemount_strong.wlz
10623_wholemount_moderate.wlz
10623_wholemount_weak.wlz
10623_wholemount_possible.wlz
10623_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10623_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T870
Entity Detected:Sds, serine dehydratase ( MGI:98270)
Sequence:sense strand is shown

>T870
CCTCGAGNCTGTTGGCCTACTGGGTACTCTCCCAGGACACAGACACAATCTACTCCTCTCGCTCGCTCTG
TCCAGCTCCTCCTGTGCCGGCCATGGCTGCCCAGGAGTCCCTGCATGTGAAGACCCCACTTCGTGACAGC
ATGGCGTTGTCCAAATTGGCCGGCACCAGCGTGTTCCTAAAAATGGACAGCTCCCAGCCCTCAGGCTCCT
TCAAGATCCGAGGCATTGGGCATCTCTGCAAGATGAAAGCAAAACAAGGCTGTAGACATTTTGTCTGTTC
TTCAGCTGGCAACGCGGGCATGGCGACCGCCTACGCTGCCAGGAGGCTGGGCATCCCAGCCACTATCGTT
GTGCCCAACACCACACCTGCCCTCACCATTGAGCGGCTCAAGAATGAAGGCGCCACAGTTGAAGTGGTGG
GAGAGATGCTGGATGAGGCCATCCAAGTGGCCAAGGCTCTGGAAAAGAACAACCCGGGTTGGGTGTACAT
TTCCCCCTTTGATGACCCTCTCATCTGGGAAGGCCACACTTCCCTTGTGAAAGAGCTGAAGGAGACGCTG
AGCGCCAA
Notes:The probe template was PCR amplified from IMAGE:1923700 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1923700 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:10625 same embryo
 EMAGE:10622 same embryo
 EMAGE:10624 same embryo
 EMAGE:10621 same embryo
 EMAGE:10626 same embryo
 EurExpress:euxassay_003269 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS