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EMAGE:108

Pax7 paired box gene 7 ( MGI:97491)
TS15 (9.5 dpc)
in situ hybridisation

Data Images
EMAGE:108
Fig 5B, Borycki et al., 1999 [PMID:10079229] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd. who owns the copyright

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
There is a black arrowhead pointing to the pre-somitic mesoderm and a white arrowhead pointing to the neural tube in this image.
Expression Pattern Description
Spatial Annotation:
EMAGE:108Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
108_wholemount_strong_3D_1.wlz
108_wholemount_moderate_3D_1.wlz
108_wholemount_weak_3D_1.wlz
108_wholemount_notDetected_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:108_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
neural tube
detected detected
tail unsegmented mesenchyme
not detected not detected
homogeneousExpression was noted to be absent from the presomitic mesoderm
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:14755
Entity Detected:Pax7, paired box gene 7 ( MGI:97491)
Sequence:sense strand is shown

>MGI:14755
GGCCGGGTCAATCAGCTTGGTGGGGTCTTCATCAACGGTCGACCCCTGCCGAACCACATCCGTCACAAGA
TAGTAGTGGAAATGGCCCACCATGGCATCCGGCCCTGCGTCATCTCCCGTCAGCTCCGTGTTTCTCATGG
TTGTGTCTCCAAGATTCTGTGCCGATATCAGGAGACTGGGTCCATCCGGCCCGGGGCTATCGGAGGCAGC
AAGCCCAGACAGGTGGCGACTCCGGATGTGGAGAAAAAGATTGAGGAGTATAAGAGAGAGAACCCCGGGA
TGTTCAGCTGGGAAATCCGGGACCGCTGGCTGAAGGACGGTCACTGCGACCGAAGCACGGTGCCCTCAGT
GAGTTCGATTAGCCGAGTGCTCAGAATCAAGTTCGGGAAGAAAGAGGACGACGAGGAAGGAGACAAGAAA
GAAGAAGATGGCGAGAAGAAAGCCAAACACAGCATCGATGGCATCCTGGGCGACAAAGGGAACCGTCTGG
ATGAGGGCTCAGGTGTGGAATCAGAACCCGACCTCCCCCTGAAGCGCAAGCAGCGCCGCAGTCGGACCAC
GTTCACAGCCGAGCAGCTGGAGGAGCTGGAGAAGGCCTTCGAGAGGACCCACTACCCGGACATCTACACC
CGGGAGGAGCTGGCACAGAGGACCAAGCTCACGGAGGCACGCTTCCAGGTCTGGTTCAGTAACCGGCGTG
CCCGCTGGCGTAAGCAGGCAGGAGCTAACCAGCTGGCCGCCTTCAACCACCTTCTGCCGGGAGGTTTCCC
ACCCACCGGCATGCCCACGCTGCCACCCTACCAGCTGCCGGACTCTACCTACCCCACCACCACCATCTCC
CAAGATGGGGGCAGCACAGTACACAGGCCCCA
nt 1 - nt 872 of U20792.1
Notes:Probe described by Borycki et al., 1999 [PMID:10079229] as the "872bp sequence deposited in Genbank (U20792)".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:9.5 dpc
Theiler Stage:TS15
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Borycki et al., 1999 [PMID:10079229] , Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:10079229] Borycki AG, Li J, Jin F, Emerson CP, Epstein JA 1999 Pax3 functions in cell survival and in pax7 regulation. Development (126):1665-74
Links:MGI:1340846 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI