EMAGE mouse gene expression spatial database

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EMAGE:10958

Rrp7a ribosomal RNA processing 7 homolog A (S. cerevisiae) ( MGI:1922028)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003379. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003379_01	euxassay_003379_02	euxassay_003379_03	euxassay_003379_04

euxassay_003379_05	euxassay_003379_06	euxassay_003379_07	euxassay_003379_08	euxassay_003379_09

euxassay_003379_10	euxassay_003379_11	euxassay_003379_12	euxassay_003379_13	euxassay_003379_14

euxassay_003379_15	euxassay_003379_16	euxassay_003379_17	euxassay_003379_18	euxassay_003379_19

euxassay_003379_20	euxassay_003379_21

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10958_wholemount_strong.wlz

10958_wholemount_moderate.wlz

10958_wholemount_weak.wlz

10958_wholemount_possible.wlz

10958_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10958_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T6689
Entity Detected:	Rrp7a, ribosomal RNA processing 7 homolog A (S. cerevisiae) ( MGI:1922028)
Sequence:	sense strand is shown >T6689 CAAGATGGTGTCTCGCAGGAAGAAACGGAAGGCTGGCGGCCACGAGGAGAGCATACCGAGCCCACCGGGG TATTCAGCTGTTCCAGTCAAGTTCTCGGCAAAGCAGCAGGCTCCTCATTACCTCTACATGAGACAGCACC GAGTTCGCCAAGGCACCCAGTCCACATGGCCTCCCGATCGAACCCTTTTTATCCTTAATGTGCCCCCGTA CTGCACACAGGAGAGCCTGTCTCGGTGCCTCTCCTGTTGCGGCACCATCAAGACAGTGGAGCTGCAGGAG AAGCCCGACCTTGCCGAGAGCCCCACGGAGCCAAAGTCACAGTTTTTCCATCCCAAGCCGGTGCCGGGCT TTCAGGTAGCTTATGTGGTGTTCCAGAAGCCAAGTGGAGTGTCGGCCGCCTTGAACCTGAAGGGCCCATT GCTGGTTTCTACAGAGAGCCACCTTGTGAAGAGCGGAATTCACAAGTGGATCAGCGACTATGAAGACTCC GTGCTGGACCCTGAGGCCCTGAGAATGGAAGTAGACGCATTCATGGAGGCCTATGACAAGAAGATAGCTG AGGAGGAGGCTAAGGCCAAGGAAGAGGAGGGAGTACCTGACGAGGAGGGCTGGGTGAAGGTCACCCGCCG GGGCCGCAGGCCTGTGCTCCCTCGGACGGAAGCGGCCAGCCTGCGTGTTCTCGAGAAGGAGAAACGGAAG CGTGCCCGCAAGGAGCTGCTCAACTTCTATGCCTGGCAGCACCGAGAGACCAAGATGGAGCACCTGGCAC AGCTGCGAAAGAAGTTTGAGGAGGACAAGCAGAGGATCGAACTGATGCGGGCCCAGCGTAAATTCCGACC CTACTGAGCTGTTCTGACAAGCAGATACCAGGCCAGGAAGTAGCTGTTCCCACACTTCCATCTCTGCACC GACGCAAGGCTGCCTTGGAGGAGGATTTGGCCTTCACAGAGCTGCCTCTGCCCTCTCCTGCCTAGAAAGA CACTCCCAGGATACCTGGCTCACCATCTGGCAAGCGTGCCCTCCATGCAGCCCCTCCTGACAACAGCCAC TTGGAACTCAGTGAAGATGGGAGATTTTATTTCCACCACTGGTGGCAAGGCCACAGAAGCCTCAGAGCCC AGAGGGTCGGCTCCAGCCCTGCTTCCTTAGCATCACCAAAGCTCACCAAACACCCCAGGCCCTTTGTCAG AGTCACAGATAAGGCCAGAATCTTCTTTTCCCTGCCCCTACCTCTGCTGAAGGAGTCTCTGCTGCCTCTC TTGGTCTGCAAGACTCCCGCCCACTCCACCTGTTTTGTGGGACGAGAGTGCTCGAGATCCAGTGGAAGCT AGAAAGTGCACAGGATCCCAGAGCTACAGCCTGGCAGAAGTCATCCTCTGTAGGCCCTGTAGGAAGGGAC CGACGACTCCGGCCACCACCTGGGGCTTGTTCATGTGGATGTAGTGATTGCCTGGGACTTCCACAAACTG GAACCGCTAGAGAAAGGGGGTGGGTGGTGAGATAGCGCCCACTCAGGAGACTCCTGTGGTCAGAGGCAAC CTTGTCTATTCACAGTAGCCTGGGGACTTGGAGGCTGTCACGGAAATGTAGGTATCTGAGCTGTGTATAT ATTACACCGGGGCAGCTACAGTCAGGGTCACTGCTGGTTCTGTTCGAGATAAAGCCCACAAAGGCAGGCA GGGTACTGCAGGAGCTTGCCAAATAGAGAGCCCCACTCCCGCTTTGTGAGAGCATCAGGCCCTGTGTAGG GATCCCCAGCAGTAACACTTGTCAGTTTACTGGTCCTGGGAGCAACGGAGGCAAGTGCAGGGCTGCTTCT GGGAGATGCACCTCAGAATTAGGCCTGGCCAGGGGTTAGGGGAGGGTAATAAAATTCTTCCACCAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3602183 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3602183 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10959 same embryo
	EMAGE:10961 same embryo
	EMAGE:10960 same embryo
	EMAGE:10962 same embryo
	EurExpress:euxassay_003379 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source