EMAGE mouse gene expression spatial database

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EMAGE:10968

Cxcl12 chemokine (C-X-C motif) ligand 12 ( MGI:103556)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_003442. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_003442_01	euxassay_003442_02	euxassay_003442_03	euxassay_003442_04

euxassay_003442_05	euxassay_003442_06	euxassay_003442_07	euxassay_003442_08	euxassay_003442_09

euxassay_003442_10	euxassay_003442_11	euxassay_003442_12	euxassay_003442_13	euxassay_003442_14

euxassay_003442_15	euxassay_003442_16	euxassay_003442_17	euxassay_003442_18	euxassay_003442_19

euxassay_003442_20	euxassay_003442_21	euxassay_003442_22	euxassay_003442_23	euxassay_003442_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10968_wholemount_strong.wlz

10968_wholemount_moderate.wlz

10968_wholemount_weak.wlz

10968_wholemount_possible.wlz

10968_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10968_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T5935
Entity Detected:	Cxcl12, chemokine (C-X-C motif) ligand 12 ( MGI:103556)
Sequence:	sense strand is shown >T5935 TCTCGGTCCACCTCGGTGTCCTCTTGCTGTCCAGCTCTGCAGCCTCCGGCGCGCCCTCCCGCCCACGCCA TGGACGCCAAGGTCGTCGCCGTGCTGGCCCTGGTGCTGGCCGCGCTCTGCATCAGTGACGGTAAACCAGT CAGCCTGAGCTACCGATGCCCCTGCCGGTTCTTCGAGAGCCACATCGCCAGAGCCAACGTCAAGCATCTG AAAATCCTCAACACTCCAAACTGTGCCCTTCAGATTGTTGCACGGCTGAAGAACAACAACAGACAAGTGT GCATTGACCCGAAATTAAAGTGGATCCAAGAGTACCTGGAGAAAGCTTTAAACAAGTAAGCACAACAGCC CAAAGGACTTTCCAGTAGACCCCCGAGGAAGGCTGACATCCGTGGGAGATGCAAGGGCAGTGGTGGGGAG GAGGGCCTGAACCCTGGCCAGGATGGCCGGCGGGACAGCACTGACTGGGGTCATGCTAAGGTTTGCCAGC ATAAAGACACTCCGCCATAGCATATGGTACGATATTGCAGCTTATATTCATCCCTGCCCTCGCCCGTGCA CAATGGAGCTTTTATAACTGGGGTTTTTCTAAGGAATTGTATTACCCTAACCAGTTAGCTTCATCCCCAT TCTCCTCATCCTCATCTTCATTTTAAAAAGCAGTGATTACTTCAAGGGCTGTATTCAGTTTGCTTTGGAG CTTCTCTTTGCCCTGGGGCCTCTGGGCACAGTTATAGACGGTGGCTTTGCAGGGAGCCCTAGAGAGAAAC CTTCCACCAGAGCAGAGTCCGAGGAACGCTGCAGGGCTTGTCCTGCAGGGGGCGCTCCTCGACAGATGCC TTGTCCTGAGTCAACACAAGATCCGGCAGAGGGAGGCTCCTTTATCCAGTTCAGTGCCAGGGTCGGGAAG CTTCCTTTAGAAGTGATCCCTGAAGCTGTGCTCAGAGACCCTTTCCTAGCCGTTCCTGCTCTCTGCTTGC CTCCAAACGCATGCTTCATCTGACTTCCGCTTCTCACCTCTGTAGCCTGACGGACCAATGCTGCAATGGA AGGGAGGAGAGTGATGTGGGGTGCCCCCTCCCTCTCTTCCCTTTGCTTTCCTCTCACTTGGGCCCTTTGT GAGATTTTTCTTTGGCCTCCTGTAGAATGGAGCCAGACCATCCTGGATAATGTGAGAACATGCCTAGATT TACCCACAAAACACAAGTCTGAGAATTAATCATAAACGGAAGTTTAAATGAGGATTTGGACTTTGGTAAT TGTCCCTGAGTCCTATATATTTCAACAGTGGCTCTATGGGCTCTGATCGAATATCAGTGATGAAAATAAT AATAATAATAATAATAACGAATAAGCCAGAATCTTGCCATGAAGCCACAGTGGGGATTCTGGGTTCCAAT CAGAAATGGAGACAAGATAAAACTTGCATACATTCTTATGATCACAGACGGCCCTGGTGGTTTTTGGTAA CTATTTACAAGGCATTTTTTTACATATATTTTTGTGCACTTTTTATGTTTCTTTGGAAGACAAATGTATT TCAGAATATATTTGTAGTCAATTCATATATTTGAAGTGGAGCCATAGTAATGCCAGTAGATATCTCTATG ATCTTGAGCTACTGGCAACTTGTAAAGAAATATATATGACATATAAATGTATTGTAGCTTTCCGGTGTCA GCCACGGTGTATTTTTCCACTTGGAATGAAATTGTATCAACTGTGACATTATATGCACTAGCAATAAAAT GCTAATTGTTTCATGCTGTAAAAAAAAAAAAAAAAAAAAAAG
Notes:	The probe template was PCR amplified from IMAGE:3483088 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3483088 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10966 same embryo
	EMAGE:10965 same embryo
	EMAGE:10964 same embryo
	EMAGE:10963 same embryo
	EMAGE:10967 same embryo
	EurExpress:euxassay_003442 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source