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EMAGE:11081

Rbm42 RNA binding motif protein 42 ( MGI:1915285)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11081 EMAGE:11081 EMAGE:11081 EMAGE:11081 EMAGE:11081
"Pseudo-wholemount" of euxassay_003652. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003652_01 euxassay_003652_02 euxassay_003652_03 euxassay_003652_04
EMAGE:11081 EMAGE:11081 EMAGE:11081 EMAGE:11081 EMAGE:11081
euxassay_003652_05 euxassay_003652_06 euxassay_003652_07 euxassay_003652_08 euxassay_003652_09
EMAGE:11081 EMAGE:11081 EMAGE:11081 EMAGE:11081 EMAGE:11081
euxassay_003652_10 euxassay_003652_11 euxassay_003652_12 euxassay_003652_13 euxassay_003652_14
EMAGE:11081 EMAGE:11081 EMAGE:11081 EMAGE:11081 EMAGE:11081
euxassay_003652_15 euxassay_003652_16 euxassay_003652_17 euxassay_003652_18 euxassay_003652_19
EMAGE:11081 EMAGE:11081 EMAGE:11081 EMAGE:11081
euxassay_003652_20 euxassay_003652_21 euxassay_003652_22 euxassay_003652_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11081Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11081_wholemount_strong.wlz
11081_wholemount_moderate.wlz
11081_wholemount_weak.wlz
11081_wholemount_possible.wlz
11081_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11081_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6659
Entity Detected:Rbm42, RNA binding motif protein 42 ( MGI:1915285)
Sequence:sense strand is shown

>T6659
CCATACGTCATCGGCCGGCTCCCACCCTGAGACGACAGGGACTCGACCGTAGAACCCGCTGCGGCTGCTG
GAAGGAGCGGTGAAGGCTATGGCATCAGCGATGGCCGGAGCAGGGCCGGCTCCGGGACTCCCGGTGGCGG
GAGGGCCGGTGGTCCCGGGGCCTGGTGTCGGCATCCCGGGCAAGAGCGGCGAGGAACGCTTGAAAGAAAT
GGAGGCGGAGATGGCCCTGTTTGAGCAAGAAGTATTGGGAGCTCCGGTGACCGGAATCCCAACTGCTGTG
CCTGCGGTGCCCACGGTAGAAGCGATGCAGGTCCCCCCAGCTCCTGTGATCCGCCCAATTATCGCCACCA
ACACATACCAACAGGTCCAACAGACTCTGGAGGCCAGGGCAGCTGCTGCAGCCACAGTTGTTCCTCCCAT
GGTGGGAGGCCCTCCTTTTGTGGGCCCAGTTGGCTTTGGCCCTGCCGATCGTGGTCACCTGGACAGTCCT
GAGGCTCGAGAGGCCATGTTCCTGAGGCGAGCAGCTGTGGCCCCTCAGAGGGCCCCTATCCTGCGTCCTG
CCTTCGTCCCCCACGTGCTACAGAGAGCAGATTCTGCCCTTTCCTCTGCAGCTGGTGGCCCCCGACCTAT
GGCCCTGAGGCCTCCACACCAGGCCCTGGTTGGACCCCCTCTGCCTGGGCCTCCTGGACCACCCATGATG
CTGCCACCAATGGCTCGGGCACCTGGACCACCCCTGGGTTCTATGGCTGCTCTGAGACCTCCCCTGGAAG
AGCCAGCAGCTCCACGAGAGCTAGGCCTAGGCCTTGGTTTGGGCCTGAAGGACAAGGAAGAGGCAGTAGT
GGCCGCAGCGGCTGGGCTGGAGGAAGCTAGCGCAGCAGTGGCAGTGGGGGCAGGAGGAGCCCCAGCTGGG
CCTGCAGTCATTGGCCCCAGCCTCCCGCTGGCCCTCGCCATGCCCTTGCCTGAGCCTGAGCCCTTGCCCC
TCCCACTGGAGGTGGTACGTGGCCTGCTGCCTCCGCTGAGAATTCCTGAGCTCTTGTCTCTCCGTCCACG
ACCTCGGCCCCCTCGGCCTGAGCCTCCTCCTGGCCTCATGGCCCTAGAGGTGCCAGAGCCACTGGGTGAA
GACAAGAAGAAAGGCAAGCCAGAGAAACTGAAACGCTGCATTCGCACAGCAGCGGGGAGCAGCTGGGAGG
ACCCCAGCCTGCTGGAGTGGGATGCCGATGACTTCCGGATCTTCTGCGGGGATCTGGGCAATGAGGTGAA
CGATGACATCTTGGCACGAGCCTTCAGCCGCTTCCCATCCTTCCTTAAGGCTAAGGTGATCCGTGACAAG
CGCACAGGCAAAACCAAGGGCTATGGCTTTGTCAGCTTCAAAGACCCCAGTGACTATGTGCGCGCCATGC
GAGAGATGAATGGGAAGTATGTGGGCTCACGCCCCATCAAGCTTCGCAAAAGCATGTGGAAGGACCGGAA
CCTGGATGTGGTCCGTAAGAAGCAGAAGGAAAAGAAAAAGTTGGGCCTCAGATAGGATCTGTGGCTAAGC
ACCCGCTCCCACCCGGCTGTGCGCTAGCTCCTTTCAACAGTTGTCCACTCGCCTGTCCCAAAACCAGTTT
CAATAAATTACCTTCATTTCCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3600406 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3600406 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11079 same embryo
 EMAGE:11078 same embryo
 EMAGE:11082 same embryo
 EMAGE:11080 same embryo
 EMAGE:11077 same embryo
 EurExpress:euxassay_003652 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS