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EMAGE:11129

Tlcd1 TLC domain containing 1 ( MGI:1915572)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11129 EMAGE:11129 EMAGE:11129 EMAGE:11129 EMAGE:11129
"Pseudo-wholemount" of euxassay_003616. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003616_01 euxassay_003616_02 euxassay_003616_03 euxassay_003616_04
EMAGE:11129 EMAGE:11129 EMAGE:11129 EMAGE:11129 EMAGE:11129
euxassay_003616_05 euxassay_003616_06 euxassay_003616_07 euxassay_003616_08 euxassay_003616_09
EMAGE:11129 EMAGE:11129 EMAGE:11129 EMAGE:11129 EMAGE:11129
euxassay_003616_10 euxassay_003616_11 euxassay_003616_12 euxassay_003616_13 euxassay_003616_14
EMAGE:11129 EMAGE:11129 EMAGE:11129 EMAGE:11129 EMAGE:11129
euxassay_003616_15 euxassay_003616_16 euxassay_003616_17 euxassay_003616_18 euxassay_003616_19
EMAGE:11129 EMAGE:11129 EMAGE:11129 EMAGE:11129 EMAGE:11129
euxassay_003616_20 euxassay_003616_21 euxassay_003616_22 euxassay_003616_23 euxassay_003616_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11129Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11129_wholemount_strong.wlz
11129_wholemount_moderate.wlz
11129_wholemount_weak.wlz
11129_wholemount_possible.wlz
11129_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11129_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6626
Entity Detected:Tlcd1, TLC domain containing 1 ( MGI:1915572)
Sequence:sense strand is shown

>T6626
CGATCGTGGCGCGCTGGCCAGAGAAGGAACGGTGTTCCCAGAACTGTCGGAGGAGACGGCTTAAGGGGCG
GACAGACAGACGGCAGGAAGGGTCAGCATGCCCCTACTGTTCCACCCCGCCTGGCCGCTGCTCCTGGGCG
CCACGCTGACCTTCCGGGCACTCCGGCGCGTGCTCTGTCGCCTGCCCCAGCCTGCACACGTGCAAACCGA
CCCCCTGCGCACCTGGCGTTGGCACAACCTACTCGTCTCTTTCACCCACTCCATTGTATCAGGGATCTGG
GCACTGCTGTGCTTATGGCAAACCCCTGAAATGCTGGTGGAGATTGAAACAGCGTGGTCAGCTTCTGGCT
ATTTGCTTGTTTGCTTCTCTGCAGGATACTTTATCCACGACACAGTGGACATTGTGGTTAGCAAGCAAAC
TCGAGCTTCTTGGGAATACCTTGTTCATCATGTCATGGCTATGGGCGCCTTCTTCTCTGGTATCTTTTGG
AAAAGATTTGTTGGTGGTGGCGTCTTAACACTACTGGTAGAGGTCAGCAACATCTTCCTCACCTTAAGGA
TGATGATGAAGATAAACAATGCTCAGGATCTCCTCCTCTACAAGGTCAACAAGTATATCAACTTGGTCAT
GTACTTCCTCTTCCGATTGGCCCCTCAGGCCTACCTCACCAAGTTCTTCCTACAGTATGCTGGCCAGAGG
ACCCTGGGCACATTCTTGTTGGCCATCCTGCTCATGCTGGACTTGATGATAATCATCTACTTTTCTCGCC
TCCTCCGCTCTGATTTCTGCCCTGAACGTGCACCCAGGCGCCAACAAAAAGACAAATTCTTGACTGAGTG
AGAAAGTAGAACCCAGGACTTGTAAAAGGGATGGCAAGCACAGCCAATTGCTCTGTAACATAAACTAGTA
CTCTGCCCCAAGCTTGGGTGTATTCTGGGGCCAGCCTTTCCACCTTAAGCTTACACTCACACTATTGAAA
ACACTAATGAAAGCTCTCTGAAGTCCTGTTCTTGGGCAAGGGTTGAGGGAAGCAGACCAACCGGTTGGGC
ATGGCTAAATGGGTGAGGACAAGACACTGTCCAAAAGCCTGCCAACCCATACTGCCCTGAAATGGATGCT
GACAATTCTAAAATAACCCCTCTGCTCTTCCAAACCCTGGTATTGGTTTCACACCAGCCTGTAGCAGGGA
AGGAATTCTTGTAAAGCTTGTCCTTTGAGCCTGTGATGGAGCAGTGTCCCAGGAGAACCAACACCTGTCT
ATAATAAATGACCCTGGTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3598444 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3598444 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11132 same embryo
 EMAGE:11131 same embryo
 EMAGE:11128 same embryo
 EMAGE:11133 same embryo
 EMAGE:11130 same embryo
 EurExpress:euxassay_003616 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS