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EMAGE:11186

C3ar1 complement component 3a receptor 1 ( MGI:1097680)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11186 EMAGE:11186 EMAGE:11186 EMAGE:11186 EMAGE:11186
"Pseudo-wholemount" of euxassay_003592. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003592_01 euxassay_003592_02 euxassay_003592_03 euxassay_003592_04
EMAGE:11186 EMAGE:11186 EMAGE:11186 EMAGE:11186 EMAGE:11186
euxassay_003592_05 euxassay_003592_06 euxassay_003592_07 euxassay_003592_08 euxassay_003592_09
EMAGE:11186 EMAGE:11186 EMAGE:11186 EMAGE:11186 EMAGE:11186
euxassay_003592_10 euxassay_003592_11 euxassay_003592_12 euxassay_003592_13 euxassay_003592_14
EMAGE:11186 EMAGE:11186 EMAGE:11186 EMAGE:11186 EMAGE:11186
euxassay_003592_15 euxassay_003592_16 euxassay_003592_17 euxassay_003592_18 euxassay_003592_19
EMAGE:11186 EMAGE:11186 EMAGE:11186 EMAGE:11186 EMAGE:11186
euxassay_003592_20 euxassay_003592_21 euxassay_003592_22 euxassay_003592_23 euxassay_003592_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11186Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11186_wholemount_strong.wlz
11186_wholemount_moderate.wlz
11186_wholemount_weak.wlz
11186_wholemount_possible.wlz
11186_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11186_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6585
Entity Detected:C3ar1, complement component 3a receptor 1 ( MGI:1097680)
Sequence:sense strand is shown

>T6585
CTTCATTTTGGCTGGACCAGACAGGATTTGTTGGTGGCTCGCAGATCATCAGTCCTGGAGCCTTTGGATT
CCATCTCAGTGTGCTTGACTGAGCCATGGAGTCTTTCGATGCTGACACCAATTCAACTGACCTACACTCA
CGGCCTCTGTTTCAACCCCAAGACATTGCCTCCATGGTCATTCTTGGTCTCACTTGTCTATTGGGACTGC
TAGGCAATGGGCTGGTGCTGTGGGTAGCTGGCGTAAAGATGAAGACGACCGTGAACACAGTCTGGTTCCT
CCATCTCACCCTGGCCGATTTCCTCTGCTGCCTCTCCTTGCCCTTCTCCTTGGCTCACCTGATTCTCCAA
GGACACTGGCCCTATGGCTTGTTCCTGTGCAAACTTATCCCATCCATCATTATTCTCAACATGTTTGCCA
GTGTCTTCCTGCTTACTGCCATTAGCCTGGACCGATGTCTGATAGTACATAAGCCAATCTGGTGCCAGAA
TCATCGAAACGTGAGAACCGCCTTCGCCATCTGTGGATGTGTCTGGGTGGTAGCCTTTGTGATGTGTGTG
CCCGTATTTGTATACCGTGATCTGTTCATTATGGACAATCGCAGTATATGTAGATATAATTTTGATTCCT
CCAGGTCATATGATTATTGGGACTACGTGTACAAACTAAGTCTACCAGAAAGCAATTCTACTGATAACTC
CACTGCTCAGCTAACTGGACATATGAATGACAGGTCAGCTCCTTCCTCTGTACAGGCAAGGGATTACTTT
TGGACAGTTACCACTGCCCTCCAGTCACAGCCATTCCTAACATCTCCTGAAGACTCATTCTCTCTAGATT
CAGCAAACCAACAACCCCATTATGGTGGAAAGCCTCCTAATGTCCTCACAGCCGCCGTACCCAGCGGGTT
TCCTGTTGAAGATCGTAAATCCAATACACTGAACGCTGACGCTTTTCTCTCTGCTCACACAGAACTTTTC
CCTACTGCTTCTAGTGGTCATTTATACCCCTATGATTTCCAGGGGGATTATGTTGACCAATTCACGTATG
ACAATCATGTGCCGACACCGCTGATGGCAATAACCATCACAAGGCTGGTGGTGGGCTTCCTGGTGCCGTT
TTTCATCATGGTAATTTGTTACAGCCTCATCGTCTTCAGAATGCGAAAAACCAACTTCACCAAGTCTCGG
AACAAAACCTTTCGGGTGGCTGTGGCTGTGGTCACTGTCTTTTTTATCTGCTGGACTCCATACCATCTTG
TCGGAGTCCTGCTATTGATTACTGATCCAGAAAGTTCCTTGGGGGAAGCTGTGATGTCCTGGGACCACAT
GTCCATTGCTTTAGCATCTGCCAATAGTTGCTTCAACCCTTTCCTGTATGCCCTCTTGGGGAAAGACTTT
AGGAAGAAAGCAAGACAGTCTATAAAGGGCATTCTGGAAGCAGCCTTCAGCGAAGAGCTCACGCACTCTA
CCAACTGTACCCAAGACAAAGCCTCTTCAAAAAGAAACAATATGAGTACAGATGTGTGAAGATGTGGCCC
TGGGAACCTAAGCAGAGTTCTCAGGTGAACAGTGATGGATGACATGTGAGCAGGACACTTTAGACAATTT
GGCGACTCTCAGAGAAAGGTCTCTTATTGACATCAGCATCATTTGAAAACATTAAAGATGCAAAATTTCA
AGCCCCAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3593758 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3593758 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11182 same embryo
 EMAGE:11181 same embryo
 EMAGE:11185 same embryo
 EMAGE:11184 same embryo
 EMAGE:11183 same embryo
 EurExpress:euxassay_003592 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS