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EMAGE:112

Lhx1 LIM homeobox protein 1 ( MGI:99783)
TS11 (7.5 dpc)
in situ hybridisation

Data Images
EMAGE:112
Fig 1I, Perea-Gomez et al., 1999 [PMID:10498685] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd. who owns the copyright

Expression pattern clarity: three stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Notes:
This is a doubly stained embryo - wholemount in situ hybridisation using Lim1 (Lhx1) RNA probe (purple) and immunohistochemistry with anti-HNF3beta antibody (brown) (Perea-Gomez et al., 1999 [PMID:10498685] ). Only data for the Lhx1 in situ hybridisation is included in this EMAGE entry.
Expression Pattern Description
Spatial Annotation:
EMAGE:112Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
112_wholemount_strong_3D_1.wlz
(what is wlz format?)
Download all expression domains: EMAGE:112_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
node
detected detected
regional
notochordal process
detected detected
regional
Annotation Validation: EMAGE Editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:MGI:20736
Entity Detected:Lhx1, LIM homeobox protein 1 ( MGI:99783)
Sequence:sense strand is shown

>MGI:20736
CACAGGCAGCGGGATCGTGGGCCGAGCGATGCAAGGCTGCGCGCCCAAGCGCCGCGAGTTGTGACTGAAG
CCAGGATGCTCGTCCAGGCGCAGTGAAGAGCCAGACCGTGTTGCCTCCCCAGGAGTCCAAGCGCAGGGAG
GGCCGCTCGGAGGACGCCGAGACTGCCTGGCAGGCCACCCAGGAGCGAGCGAGTGCGCCCGGCTGCGTCC
GCCCGAAGCGGTCCCTTTCCATTTTTGACTGGCACAAAAAAGAAAAAACTCTCCAAAGGGGTGGGGGCTA
CCTAAGCAACAACTACAATCAACAAAATATCCTACCCAACCCGCCATCTCCCCCACACCTCGGTCTGCCC
CCGCCCCCTCCCCAGGCCACGGCGGGCGCCCAGAGCGTCCCAACTCACTGCAAGAAGGGGAAAACCCCGG
GGTGGGCAGTCTACACGCACACAACCTGCCTTCATACTCTGACAAAGCAGATGAGCACTTGACTCTGACA
GCTCTACCTCAAGCTGGAGAGAACCCAGCTTTCCCGAATCCTGAGCTCTTGGCGTCTTCCTTTTCGTCTG
TTTCCATTTTATTTATTTACGTCCCGCCGCCTCTCACGGTGACCTTCACTCCTTCGCGGGCTTTGAGCAG
AAGAGCCGCTTTCTAGCCCGCTTGAGACTGATTTTCCTCGCCCGGTGAGCTGAGGTGGCGCTGCTCCATC
CTCGCCTGCGTGGACTCCGGGGCTGCCCTCTACCAGCCTGGTCTCTGGGGTGTTTTGATTTGCTAGTGCG
GTTTTTGCTTGCCCAACTAGAGAGGGTTCTTCTTTTTGGAGGAGCTGGTTGTCTCTAGAAGTCACCCCCT
CCAGTGTAATTGCCCTGTCGCTCCGGGCCTCACCGGACCAAACCAAAGACCATGGTGCACTGTGCGGGCT
GCAAAAGGCCCATCCTGGCACGTCAAGTGCGTCCAGTGCTGGACCGTTTCCTCTTGAACGTGTTGGACAG
GGCCTGTGAATGTAAATGCAACCTGACCGAGAAGTGCTTCTCCCGGGAAGGCAAGCTCTACTGTAAAAAC
GACTTCTTCCGATGTTTCGGTACCAAATGCGCCGGTTGTGCGCAGGGCATCTCTCCAAGCGATCTGGTTC
GCAGAGCGCGAAGCAAAGTGTTTCACCTCAACTGCTTCACCTGCATGATGTGTAACAAGCAGCTCTCCAC
CGGCGAGGAGCTCTACATCATAGACGAGAACAAGTTCGTTTGTAAAGAGGATTACCTGAGTAACAGCAGT
GTCGCCAAAGAGAACAGCCTCCACTCGGCCACCACAGGCAGTGACCCTAGTTTATCTCCGGATTCCCAAG
ATCCATCGCAGGATGATGCCAAGGACTCTGAAAGTGCCAACGTCTCAGATAAGGAAGGTGGTAGTAATGA
GAATGATGATCAGAACCTAGGTGCCAAACGTAGGGGACCCCGGACCACGATCAAAGCCAAGCAACTGGAG
ACGTTGAAGGCAGCCTTTGCAGCTACACCCAAGCCCACACGCCATATCCGTGAGCAACTGGCCCAGGAGA
CTGGCCTCAACATGCGTGTTATCCAGGTCTGGTTCCAGAATCGACGCTCCAAGGAGGCAAGGATGAAACA
GCTAAGCGCGCTAGGCGCGCGGCGCCACGCCTTTTTCCGCAGTCCTCGTCGGATGCGGCCGCTGGTGGAC
CGCCTGGAGCCGGGCGAACTCATCCCCAACGGCCCCTTCTCCTTTTACGGAGATTACCAGAGTGAGTACT
ACGGTCCCGGAGGCAACTACGACTTCTTCCCGCAAGGACCGCCATCCTCTCAGGCTCAGACGCCAGTGGA
CCTACCCTTTGTGCCATCATCTGGCCCTTCGGGGACGCCCCTTGGAGGTCTGGACCACCCGCTGCCTGGT
CACCACCACCCTTCCAGTGAGGCGCAGCGATTTACTGACATCCTGGCACATCCCCCAGGGGACTCGCCTA
GTCCTGAGCCCAGCTTGCCCGGGCCTCTCCACTCCATGTCAGCGGAGGTCTTCGGGCCCAGTCCACCTTT
CTCATCTCTGTCGGTCAATGGTGGAGCCAGCTACGGGAACCATTTGTCTCACCCTCCTGAAATGAACGAG
GCAGCCGTGTGGTAGCGGGGTCTCGCATGGGCCACGGGAGCTCGTGGTTGTACAGAGACGAGCTTTTATT
TCAGAAAAATAGATTAAAAGAC
nt 1 - nt 2192 of S68107.1
Notes:Probe used in this study by Perea-Gomez et al., 1999 [PMID:10498685] was originally described by Barnes et al., 1994 [PMID:7904966] as "the entire 2.2kb cDNA".
Chemistry:RNA
Strand:antisense
Specimen
Organism:mouse
Age:7.5 dpc
Theiler Stage:TS11
Mutations:none (wild-type)
Preparation:wholemount
Procedures
General Information
Authors:Perea-Gomez et al., 1999 [PMID:10498685] Indexed by GXD, Spatially mapped by EMAGE
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:non-screen
References:[ PMID:10498685] Perea-Gomez A, Shawlot W, Sasaki H, Behringer RR, Ang S 1999 HNF3beta and Lim1 interact in the visceral endoderm to regulate primitive streak formation and anterior-posterior polarity in the mouse embryo. Development (1999):4499-511
 [ doi:10.1006/dbio.1994.1018] [ PMID:7904966] Barnes JD, Crosby JL, Jones CM, Wright CV, Hogan BL 1994 Embryonic expression of Lim-1, the mouse homolog of Xenopus Xlim-1, suggests a role in lateral mesoderm differentiation and neurogenesis. Dev Biol (161):168-78
Links:MGI:1346180 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceMGI