EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:11360

Acsl3 acyl-CoA synthetase long-chain family member 3 ( MGI:1921455)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_006620. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_006620_01	euxassay_006620_02	euxassay_006620_03	euxassay_006620_04

euxassay_006620_05	euxassay_006620_06	euxassay_006620_07	euxassay_006620_08	euxassay_006620_09

euxassay_006620_10	euxassay_006620_11	euxassay_006620_12	euxassay_006620_13	euxassay_006620_14

euxassay_006620_15	euxassay_006620_16	euxassay_006620_17	euxassay_006620_18	euxassay_006620_19

euxassay_006620_20	euxassay_006620_21	euxassay_006620_22	euxassay_006620_23	euxassay_006620_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11360_wholemount_strong.wlz

11360_wholemount_moderate.wlz

11360_wholemount_weak.wlz

11360_wholemount_possible.wlz

11360_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11360_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

embryo

strong

ubiquitous

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T7047
Entity Detected:	Acsl3, acyl-CoA synthetase long-chain family member 3 ( MGI:1921455)
Sequence:	sense strand is shown >T7047 CTTGATTCTCATTGAAATCTGTTAATTCTATTTTTTGAACACTTATGAATAACCACGTATCTTCAACACC ATCAACCATGAAGCTAAAACAAACCATCAACCCCATACTTTTATATTTCATACATTTTATAATATCACTC TATACTATTTTAACATACATCCCATTTTATTTTTTGTGTGAGTCAAAACAAGAGAAACCAAACCAAATTA AAGCAAAACCTGTCAGTTCCAAACCGGACTCTGCATACAGATCTATCAACAGTGTGGATGGCTTGGCTTC AGTGCTGTATCCTGGCTGCGATACACTTGATAAAGTCTTTATGTATGCAAAAAACAAATTTAAAAACAAA AGACTATTGGGAACACGTGAAATTTTGAATGAGGAAGATGAAATACAGCCAAATGGAAAAATTTTTAAAA AGGTTATTCTGGGGCACTATAATTGGCTTTCCTATGAAGATGTCTTCATCCGAGCCCTTGACTTTGGAAA TGGGTTACAAATGTTGGGCCAGAAACCAAAGGCCAACATCGCCATCTTCTGTGAGACCAGGGCTGAGTGG ATGATCGCTGCACAGGCGTGTTTTATGTATAACTTCCAGCTTGTTACACTGTATGCTACTCTGGGAGGTC CAGCCATTGTTCATGGACTGAATGAGACAGAGGTGACCAACATCATTACTAGCAAAGAACTCTTGCAAAC AAAGCTGAAGGATATAGTCTCTTTGGTCCCACGTCTGCGGCATATCATTACTGTTGATGGGAAGCCTCCA ACCTGGTCTGAGTTCCCCAAAGGTGTCATTGTACACACCATGGCTGCAGTGCAGGCTCTAGGAGTGAAGG CCAACGTGGAAAAGAAAGCTCACAGCAAACCACTGCCCTCAGATATTGCAGTAATCATGTACACAAGTGG GTCCACAGGAATTCCAAAGGGAGTCATGATCTCACACAGCAACATCATTGCTTCTATAACGGGGATGGCG AGAAGGATTCCAAGACTGGGAGAGGAAGATGTGTATATTGGCTACTTGCCCCTGGCACATGTTCTAGAAT TAAGTGCTGAGCTTGTGTGTCTTTCTCATGGATGCCGAATCGGCTACTCTTCACCACAGACATTAGCAGA TCAGTCTTCAAAAATAAAAAAAGGAAGCAAAGGAGACACATCCGTGCTGAAGCCAACACTGATGGCAGCT GTTCCGGAAATCATGGATCGGATCTACAAAAATGTCATGAATAAAGTGAATGAAATGAGTGCTTTTCAAC GAAACTTGTTTATTTTGGCATATAATTATAAGATGGAACAGATTTCAAAAGGGTGTAGTACTCCACTGTG TGACCGCTTTGTTTTCCGGAATGTCCGAAGGCTGCTGGGTGGAAATATTCGCCTTTTACTGTGTGGTGGT GCTCCGCTTTCTGCAACAACGCAGCGATTCATGAATATCTGTTTCTGCTGTCCCGTTGGTCAGGGGTATG GACTCACAGAATCTACTGGGGCTGGAACAATTACAGAAGTGTGGGACTACAATACCGGCAGAGTGGGAGC ACCATTAGTTTGCTGTGAAATCAAATTAAAGAACTGGGAGGAAGGTGGCTATTTTAATACTGACAAACCA CATCCCAGAGGTGAAATTCTTATTGGTGGCCAAAATGTGACAATGGGGTACTACAAAAATGAAGCAAAAA CAAAGACAGATTTCTTTGAAGATGAAAATGGACAGCGGTGGCTGTGCACTGGAGATATTGGAGAGTTTGA CCCTGACGGCTGTCTGAAGATCATTGACCGTAAAAAGGACCTTGTGAAACTACAGGCAGGAGAGTACGTT TCTCTCGGGAAAGTAGAGGCAGCTTTGAAGAACCTCCCACTGATAGATAACATTTGTGCGTATGCAAACA GCTACCATTCTTACGTAATTGGGTTTGTTGTGCCAAATCAAAAGGAACTTACAGAGCTAGCTAGAACAAA AGGATTTAAAGGAACTTGGGAAGAGCTGTGTAACAGCAGCGAGATGGAAAATGAGGTCCTTAAAGTGCTT TCTGAAGCTGCTATTTCAGCAAGTCTGGAAAAGTTTGAAATTCCACTAAAAATACGTTTGAGCCCTGACC CATGGACTCCCGAAACTGGTCTGGTGACAGATGCCTTCAAGTTGAAACGTAAAGAGCTTAAAACACACTA CCAGGCAGACATTGAGCGGATGTATGGAAGAAAATAATTAGTTTTGGCATTGGTTTGCTACAGCGAGCTC AGATCAAATAGGAAAATACTTGAAATGTATGTCTCGGGCCGAGGCAAACTCCATTCCTTATATTAAATCC CGGCTGTTACTTCTCACTACGTCACCATTTTTAACTGACAGGATTAGTAAAGTATTAAGACAGCAAACTC GTGTCTGTCTGTTTCTTCCCCTGCTCCAGTTTGCTTCTGGCATCTGTGACTGTGCTTGTCAACAGGAGAC TTTTTCAGAATCATACTGGGGAAGCAGCGATTTTACAGCCTCAAGTTTTTAAACATGATTTATATGTTCT GTACAGTTGTTCAGTTTGTAACTTTTTAAAGTTTGGATGTATAGAAGGATAAATAGGAAATATAAAAATT GGTTATTTGGGGGGCTTTTTTACTTATTGTATTTAAAAATAAAAGGGTATCAATGTGAAATTATGTACAT TTTAAATGCTTATGAATCAAGTCATTGTTGAACAAAAGATTTGTTGCTGTGTAATTATTGTCTTGTATGC ATTTGAGAGAAATAAATATACTCAGACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4009004 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4009004 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11361 same embryo
	EurExpress:euxassay_006620 same experiment
	MGI:4822939 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source