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EMAGE:11389

Mbd6 methyl-CpG binding domain protein 6 ( MGI:106378)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11389 EMAGE:11389 EMAGE:11389 EMAGE:11389 EMAGE:11389
"Pseudo-wholemount" of euxassay_008249. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_008249_01 euxassay_008249_02 euxassay_008249_03 euxassay_008249_04
EMAGE:11389 EMAGE:11389 EMAGE:11389 EMAGE:11389 EMAGE:11389
euxassay_008249_05 euxassay_008249_06 euxassay_008249_07 euxassay_008249_08 euxassay_008249_09
EMAGE:11389 EMAGE:11389 EMAGE:11389 EMAGE:11389 EMAGE:11389
euxassay_008249_10 euxassay_008249_11 euxassay_008249_12 euxassay_008249_13 euxassay_008249_14
EMAGE:11389 EMAGE:11389 EMAGE:11389 EMAGE:11389 EMAGE:11389
euxassay_008249_15 euxassay_008249_16 euxassay_008249_17 euxassay_008249_18 euxassay_008249_19
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euxassay_008249_20 euxassay_008249_21 euxassay_008249_22 euxassay_008249_23 euxassay_008249_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11389Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11389_wholemount_strong.wlz
11389_wholemount_moderate.wlz
11389_wholemount_weak.wlz
11389_wholemount_possible.wlz
11389_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11389_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9328
Entity Detected:Mbd6, methyl-CpG binding domain protein 6 ( MGI:106378)
Sequence:sense strand is shown

>T9328
ATGGAACGGTCCCCAAGAAGGACTCACCATTGGCAGCATAATGGGGAGCTAGCGGAAGGGGGTGCTGAGC
CCAAGGATCCACCCCTTCCTGGGACCCATTCTGAGGACCTTAAGGTGCCCCCGGGGATAGTCAGAAAGTC
TCGTCGTGGCCGGAGGAGAAAATACAACCCTGCCCGGAACAGCAGCAGCTCCCGCCAGGACGTGACCTTG
GAACCCAGCCCTACAACGCGAGCAGCTGTCCCTTTGCCTCCCCGGGCCCGCCCTGGACGTCCTGCCAAAA
ATAAGAGGAGGAAACTGGCCCCATAGCAGCCATACCTGGAGCTGGAATCTGACCCTGACTGGGGAGAGCT
GAGTGCTGAGCCTTGGGAGCCCCTGCCAGCCACGTGCACCTGTGGACAGTGGGTGGGGCACTACTCCCCA
CTCAGAGCACAAATGCAACCCCTCCCCTACAAATCCCATCCTGAGCCATTGCAGGGGTAGGGAAGCTCAC
CCCTCCCCCCCAAAGCCATGTCACTGAAGAGGCCTGGGGGGTGGTATATGGCCCCTCCCCATCAGGCGCT
AAGGGGACACCCCTTCCCCAGGTCTTTTATTTGTTTAAGTTATTTTTGCACAAATGACTCTTTTATATTT
AATTCGACTTCATTGCCTCCCTTCTTAAAGCTAGCAGGCTCAGTTTACAAACCTGTGAGCTACTGTTGGC
TGCTGCCCTCCTTCCCAGTGAAAGGTACAGAGCAATAAGCATCATGCATCTCCCCGATTCCCACTAGCAC
CCCTCTGCCTCTGGCTCAGGTTGCTCAAAGCACAGATCCCCTCTTATCCCTGTCCCCAGGACCGAAACAC
ATAGCCTCATTTCAAAGCGTAGCCAGGTTCCCTCTGCTTTCCTCTGGGATATGGAAAGGGGGCCAAGAGG
ACTTTGGATCTCTCCTCCATACACACTACACTGGCCCTTCTCCCCATCAAGCGCTCAGAGACGGTGTGAC
GATGCCACTGGGGGTTATGCAGCGTGGTCCAGCCGGAGCGGCCAGCATGACCAGCTGTCCAGGGGCTGCC
TCCTGCCTTTTTTTTTGTAAAGACAAGACCCTTGGGAGTTTTCATTCTGTTTTGTACTTGCCCTGTGGGG
CCTCCACTGCTTTTCTATGGGAGACACTCTTAATTTAACAGATGAGAATATTTTGAAACTCTGAAAAAAA
AAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6848384 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6848384 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11390 same embryo
 EMAGE:11388 same embryo
 EMAGE:11387 same embryo
 EMAGE:11386 same embryo
 EurExpress:euxassay_008249 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS