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EMAGE:11416

Nphs2 nephrosis 2 homolog, podocin (human) ( MGI:2157018)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11416
euxassay_006720_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11416Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11416_wholemount_moderate.wlz
11416_wholemount_weak.wlz
11416_wholemount_possible.wlz
11416_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11416_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8119
Entity Detected:Nphs2, nephrosis 2 homolog, podocin (human) ( MGI:2157018)
Sequence:sense strand is shown

>T8119
GGGGCTGCGACTCTGCCAGCAGCTGGCTCCGGGGTTGCACCGCTGCATTGAGAATGGACAGCAGGGCGCG
GAGCTCTTCCCGAGAGGCCCACGGGAGAAGTAGCAGGTCCTCCTCTAGGGATGACAAGAAGGCAAAGGCC
GGGAGGGGCAGCAGAGGCCGCGCACGTCCGGATGCTGGAGCAGAGCGGCAGAGCACCGGGCGGACAGCGA
CCCGAGGGGAGCCCCGAGCTCCCGCTGCCACCGCCACCGTAGTGGACGTGGACGAGGTTCGGGGCCCTGG
TGAGGAGGGCACGGAAGTGGTGGCGCTGCTGGAGAGCGAGCGACCAGAGGAAGGCATCAAGCCCTCTGGA
TTAGGGGCCTGCGAGTGGCTTCTTGTCCTCGCCTCCCTGATCTTCATCATCATGACGTTCCCTTTTTCCA
TCTGGTTCTGCATAAAGGTTGTGCAAGAGTATGAAAGAGTAATTATATTCCGACTGGGACATCTGCTTCC
TGGAAGAGCCAAAGGTCCTGGCCTGTTCTTTTTTTTACCCTGTCTGGACACCTATCACAAGGTTGATCTC
CGTCTCCAGACCTTGGAAATACCTTTCCATGAGGTGGTAACCAAAGATATGTTTATAATGGAGATAGACG
CTGTCTGCTACTACCGCATGGAAAATGCCTCTCTTCTTCTAAGCAGTCTAGCCCATGTGTCCAAAGCCAT
CCAGTTCCTGGTGCAAACCACCATGAAGCGCCTCTTGGCACATCGATCCCTCACTGAAATTCTCCTGGAA
AGGAAGAGCATTGCCCAAGATGTAAAGGTTGCCTTAGATGCAGTGACCTGTATTTGGGGCATCAAAGTGG
AGAGAACTGAAATTAAGGATGTGAGGCTGCCAGCTGGGCTTCAGCACTCTCTGGCGGTGGAAGCTGAGGC
ACAAAGACAGGCCAAAGTGCGGGTGATTGCTGCAGAAGGGGAAAAGGCTGCTTCAGAGTCCCTGAGGATG
GCGGCTGAGATTCTGTCGGGCACCCCAGCCGCTGTCCAGCTTCGATACTTGCACACTCTTCAGTCGCTGT
CCACAGAGAAGCCAGCCACTGTGGTTTTGCCTTTGCCATTTGACATGCTAAGCCTTTTGTCCTCTCCCGG
CAACAGAGCACAAGGGAGCATCAACTACCCAAGTTCCTCCAAACCAGTTGAACCACTAAATCCCAAAAAG
AAGGACTCTCCTATGTTATAGGCGAATGGGCAAAGGCTGTGTGAATCTGCCATATAAAGCCACATCCCTG
AGAGAGGCATTTGGTGTCCCTCACCCCCACCCCGCACTTGTTTGGTTGCCAAATAGAATGCCTTTTGAAT
GTATAAAGTCACAAGATGGCTACATGCATGAGAACACAGTGAAATGACAGTGGCAGAGAAGACAGTCAAC
CACACAAGTAGGTTGTCTCATCATATTAATTACAGGAAAGAGATTTAGAATTTTGAATTGACATGTGGTC
CGATTATGATTTCTGAAGACTTAGTTCAAATACCTTCCACTGCTTGTTTCCTGGCTCCTTCAGCAAGGCC
TTTGCGGATCCTCCAGCCTTTTTTGCAAGTGCCTATCAGTGCACATGGAGTGGAAAGCCAGGGCTTAGGA
CACAGGCATCTCCCCTTTCCGTATTCGTACAAACTCCCACTGAAACAGCCCACTTAGCTATGTTGCTGGC
TGTTAACAACTTTTCCAGCCTAAAATTCCAAACTCTCAGAAAGTAGTCCCAAGGCATAAAAGCCCTGTGG
TCAGGCATGTTGGGGCAACAACCCCACTTCCTCAGTACCAATTCTGCTCTAGTTTCATTTTTGTCTTTAT
GATTAAAATATTCCAGCAACAAGAAACTTAAAGGAGAAAGAGTTTATTTTAGGGCACAATTCCAGGTGAC
AGTCCATCACTGTGGAGAAGTTAAGGCAAGAACTTGAAGCAACTCTTACTTAGTCACTTCATGCAGGCAA
GAACATGAAGCAGCTGGTCATGTCACAGTCAAATGCAGAAAGCAATGAATACGTGGTTCTTAGTTGTCTG
AGTTCAGCTCAGTTTACCCACTCATCCAGTTCAGGGCTCCCCTGCCTAGGGAGTGCTGTCACCTATCATG
GGCTGGATCTTCGCACATTAATTAATTTAAAAACAGTCTCTCTGCAGACATGCCCACAGGATAACCTAAT
GTAGATAATCCCTCATTAGTCTCTCCTGGGGTTATTCTAGGTTGTATCAAGTTGGCAAACAAAACTAACC
TTCACATCTACATAGCAATACCCTGTCTCAAAGCCAACAACAAAAATGGAGTCACTTGTGTCAGTGTTCC
AAAAAGTAATTAAAGCCTAGACCAGTACTTCTCAAGCTTCCTGATGCTGTGACATTTTAACACAGATTCT
CACGTTGTGATGACCCCAACCATAAGGTTATTTTCACTGCTACTTAATAACTGTCATTTTGCAGAATTTT
TCATACCAAGTCCTAATTGCTTGCTGTCATGTACACTATACTACAATGTATACAAGTATGTGCTAGAGAA
CTCTCTTACTGGTAAGAAGTTATGCTGATAATCAACCAGGGATATGTGTCTGGGTCATATTCCTTATGGG
ATACAGATCTCTTGGGTAGAAGAGTTACTACCAACAGTAGGGAATGATAGGGCACAGAAAGGACAGATAT
GGGCACTGTCATACTCTGTAATACAAGGACACATTTGTACTCAACATTGTTGAAAGGACTCTTCACTGGT
AGCTTAGCATACACTGCTAATGGTTTGTTCTAAGTTAATCACCTTCCATAGCTTAGGTGCTCCTGGATGA
GAACACTTTTGATACCAACAGAAACTAGAGTTTCCATAAGTATATGGGCCCAAACATCTACACAAAGAGG
GGAAAATACAAAGAATGATAGGAAGACAGACATCATCACATGTCTCAAAAAAATGTGGCTGATCTCTTGA
CCAGAGGGGCAAGACTGAGTCTGGCATGACTGACTGGCTGCCTCTGGCCCTAACATCTCCACCTCTCCCT
ATATCATCTGTTGGAGATTGTGATGATGATGGTCTGAGATGCTAATCTGCTGCATCTCTGGTTGCTTGCT
CACTGCATAAAATATAGTTTTATGATTCAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30470258 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30470258 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11415 same embryo
 EMAGE:11414 same embryo
 EMAGE:11418 same embryo
 EMAGE:11417 same embryo
 EurExpress:euxassay_006720 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS