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EMAGE:11567

Gfra3 glial cell line derived neurotrophic factor family receptor alpha 3 ( MGI:1201403)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11567
euxassay_006749_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11567Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11567_wholemount_strong.wlz
11567_wholemount_moderate.wlz
11567_wholemount_weak.wlz
11567_wholemount_possible.wlz
11567_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11567_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8158
Entity Detected:Gfra3, glial cell line derived neurotrophic factor family receptor alpha 3 ( MGI:1201403)
Sequence:sense strand is shown

>T8158
GCCCACGACCCTAGTGGGAGAGTGGCGGCGCCGCGAGGAGGGGCGGGAGGCGGCGGTGGGAGGTGTCGGC
CGAGGGAGCCCAGCTCTCCGAGTCCTGTGCACCAAGGCAGGGGAACGCGGCGCCCAGCGCAGGCAGAGCG
CTGTCGCATCCCGGGCGTCCACCCGCCATGGGGCTCTCCTGGAGCCCGCGACCTCCACTGCTGATGATCC
TGCTACTGGTGCTGTCGTTGTGGCTGCCACTTGGAGCAGGAAACTCCCTTGCCACAGAGAACAGGTTTGT
GAACAGCTGTACCCAGGCCAGAAAGAAATGCGAGGCTAATCCCGCTTGCAAGGCTGCCTACCAGCACCTG
GGCTCCTGCACCTCCAGTTTAAGCAGGCCGCTGCCCTTAGAGGAGTCTGCCATGTCTGCAGACTGCCTAG
AGGCAGCAGAACAACTCAGGAACAGCTCTCTGATAGACTGCAGGTGCCATCGGCGCATGAAGCACCAAGC
TACCTGTCTGGACATTTATTGGACCGTTCACCCTGCCCGAAGCCTTGGTGACTACGAGTTGGATGTCTCA
CCCTATGAAGACACAGTGACCAGCAAACCCTGGAAAATGAATCTTAGCAAGTTGAACATGCTCAAACCAG
ACTCGGACCTCTGCCTCAAATTTGCTATGCTGTGTACTCTTCACGACAAGTGTGACCGCCTGCGCAAGGC
CTACGGGGAGGCATGCTCAGGGATCCGCTGCCAGCGCCACCTCTGCCTAGCCCAGCTGCGCTCCTTCTTT
GAGAAGGCAGCAGAGTCCCACGCTCAGGGTCTGCTGCTGTGTCCCTGTGCACCAGAAGATGCGGGCTGTG
GGGAGAGGCGGCGTAACACCATCGCCCCCAGTTGCGCCCTGCCTTCTGTAACCCCCAATTGCCTGGATCT
GCGGAGCTTCTGCCGTGCGGACCCTTTGTGCAGATCACGCCTGATGGACTTCCAGACCCACTGTCATCCT
ATGGACATCCTTGGGACTTGTGCAACTGAGCAGTCCAGATGTCTGCGGGCATACCTGGGGCTGATTGGGA
CTGCCATGACCCCAAACTTCATCAGCAAGGTCAACACTACTGTTGCCTTAAGCTGCTCCTGCCGAGGCAG
CGGCAACCTACAGGACGAGTGTGAACAGCTGGAAAGGTCCTTCTCCCAGAACCCCTGCCTCGTGGAGGCC
ATTGCAGCTAAGATGCGTTTCCACAGACAGCTCTTCTCCCAGGACTGGGCAGACTCTACTTTTTCAGTGG
TGCAGCAGCAGAACAGCAACCCTGCTCTGAGACTGCAGCCCAGGCTACCCATTCTTTCTTTCTCCATCCT
TCCCTTGATTCTGCTGCAGACCCTCTGGTAGCTGGGCTTCCTCAGGGTCCTTTGTCCTCTCCACCACACC
CAGACTGATTTGCAGCCTGTGGTGGGAGAGAACTCGCCAGCCTGTGGAAGAAGACCCAGCGTGCTACACA
GCAACCCGGAACCAACCAGGCATTCCGCAGCACATCCCGTCTGCTCCAGAAGAGGTCTTAGAAGTGAGGG
CTGTGACCCTTCCGATCCTGAGCGGCTAGTTTTCAAACCTCCCTTGCCCCTGCTTCCTTCCGGCTCAGGC
TGCTCCTCCTTAGGACTTTGTGGGTCCAGTTTTGCCTTCTGTTCTGATGGTGATTAGCGTCTCACCTCCA
GCGCTTCTTCCTGTTTCCCAGGACCACCCAGAGGCTAAGGAATCAGTCATTCCCTGTTGCCTTCTCCAGG
AAGGCAGGCTGAGGGTTCTGAGGTGACTGAGAAAGATGTTTGCTTTATGTGGAAGGCTGGTGCTCCAGGC
TCCACGTCCCTCTGAATGGAAGATAAAAACCTGCTGCTGTCTTGACTGCTCTGCCAGGCAATCCTGAACA
TTTGGGCATGAAGAGCTAAAGTCTTTGGGTCTTGTTTAACTCCTATTACTGTCCCCAAATTCCCCTAGTC
CCTTGGGTCATGATTAAACATTTTGACTTAGAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6430904 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6430904 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11570 same embryo
 EMAGE:11568 same embryo
 EMAGE:11569 same embryo
 EMAGE:11566 same embryo
 EMAGE:11565 same embryo
 EurExpress:euxassay_006749 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS