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EMAGE:11628

Ripply3 ripply3 homolog (zebrafish) ( MGI:2181192)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11628 EMAGE:11628 EMAGE:11628 EMAGE:11628 EMAGE:11628
"Pseudo-wholemount" of euxassay_006497. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006497_01 euxassay_006497_02 euxassay_006497_03 euxassay_006497_04
EMAGE:11628 EMAGE:11628 EMAGE:11628 EMAGE:11628 EMAGE:11628
euxassay_006497_05 euxassay_006497_06 euxassay_006497_07 euxassay_006497_08 euxassay_006497_09
EMAGE:11628 EMAGE:11628 EMAGE:11628 EMAGE:11628 EMAGE:11628
euxassay_006497_10 euxassay_006497_11 euxassay_006497_12 euxassay_006497_13 euxassay_006497_14
EMAGE:11628 EMAGE:11628 EMAGE:11628 EMAGE:11628 EMAGE:11628
euxassay_006497_15 euxassay_006497_16 euxassay_006497_17 euxassay_006497_18 euxassay_006497_19

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11628Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11628_wholemount_strong.wlz
11628_wholemount_moderate.wlz
11628_wholemount_weak.wlz
11628_wholemount_possible.wlz
11628_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11628_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7963
Entity Detected:Ripply3, ripply3 homolog (zebrafish) ( MGI:2181192)
Sequence:sense strand is shown

>T7963
GTCGGGCTGAGAGATTCGCGCGACACCCGCACCATGAGACCGGAGGCGGCCGGAGTCCGGGAGGCGCGGG
GACGCCTCTGCCACTGTCCGGGGGATGATCCCGGGAGGCTACCGCTGCCACGCGGGCCCGAAAGTTCCAT
TCCAGCCCCGTGGAGACCGTGGATGTCGCCTCCCCCCGGAGATGCTGAACTGACCAGAACTGAACGTCCG
TGTGAGTCTTGGGGAGACCAACACACATCGGGAGCAAAGGGAGCCTTTGGATTCCAGCATCCTGTCAGAC
TTTACTTACCCGTTTCAAAGCGTCAAGAATACCTTCAGAGTTCTGGGGAAAAAGTGCTGGCCAGCTTCCC
AGTGCAAGCCACCATTCATTTCTACAACGATGACTCTGAGTCTGGCTCTGAGGAGGAACAAGAGGAGGAG
GCCCAGCCCAACCACCTTCAGTGCCTGGAGGCAGAAGTCAGGGATTCTGCTCAGGAGGAAAGGGCAGAAT
AAAGCTGGCAAGCCGGTGGGATGAAGGAGTGGCCTCCAGGAAGGGTCAGCTGCCTGCAGGTGACACTGCA
GGGGGCAGCGAGAGCTCTAGCAAATGAAGGGAGCCTCTCTCTCATGCTGGTCACTGTGTCCTGGGGACAG
CCTTGCCTGCCAGGACCCAGCCTCTTCTCCAGACTCCTGTGTTGGAAGTTCAGAGGTTGGACTGTGCTCA
GTGCCTGCTGAGGCCAGGAACTCCACTTTCTTTTTTTTCCTGATGTGTGTGTCTGACTGTATGTCTGTCT
CTGTGTGTCTGTCTGTGTGTGTGCACACATGTGCTCATGCGTACTTTTGAGGAAAGGTGCCTGATGGGAA
GGTGTTCTCAGGAAGAAGGCCTCCGGAGCTCACTGCTGCTCTGAAAATGACTCCTCCCTAAACCTCACCA
CCCCTCTCTTGTCCAGAGACCCATTTTCTAGTGATTCTCCCTTCGTAAAAACAATGGAGACATTAACTCC
CATTTTAAGAGTTCATTTGCAGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGA
GATCCTGAGTTCAATTCTCAGCAACCACATGGTGGCTCCCAACCATCCGTAATGAGATCTGATGCCCTCT
TCTGGTGTGTCTGAAGACAGCTACAGTGTGCTTATATAAATAACATAAATAAATCTTTGGAAAAAAAAAA
AAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30135244 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30135244 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11630 same embryo
 EMAGE:11627 same embryo
 EMAGE:11629 same embryo
 EMAGE:11631 same embryo
 EMAGE:11632 same embryo
 EurExpress:euxassay_006497 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS