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EMAGE:11631

Yars2 tyrosyl-tRNA synthetase 2 (mitochondrial) ( MGI:1917370)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11631 EMAGE:11631 EMAGE:11631 EMAGE:11631 EMAGE:11631
"Pseudo-wholemount" of euxassay_006559. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_006559_01 euxassay_006559_02 euxassay_006559_03 euxassay_006559_04
EMAGE:11631 EMAGE:11631 EMAGE:11631 EMAGE:11631 EMAGE:11631
euxassay_006559_05 euxassay_006559_06 euxassay_006559_07 euxassay_006559_08 euxassay_006559_09
EMAGE:11631 EMAGE:11631 EMAGE:11631 EMAGE:11631 EMAGE:11631
euxassay_006559_10 euxassay_006559_11 euxassay_006559_12 euxassay_006559_13 euxassay_006559_14

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11631Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11631_wholemount_strong.wlz
11631_wholemount_moderate.wlz
11631_wholemount_weak.wlz
11631_wholemount_possible.wlz
11631_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11631_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
submandibular gland primordium
moderate moderate
regionalmoderate expression: see section 04 05 06 10 11 12 13
pancreas
moderate moderate
regionalmoderate expression: see section 06 07 09 10 11 12
rectum
moderate moderate
regionalmoderate expression: see section 09
midgut
moderate moderate
regionalmoderate expression: see section 06 07 08 09 10 11 12 13 14
liver
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14
renal cortex
moderate moderate
regionalmoderate expression: see section 04 06 07 11 12 13
seminiferous cord
moderate moderate
regionalmoderate expression: see section 03 04 13 14
urethra of male
moderate moderate
regionalmoderate expression: see section 09 10
lung
moderate moderate
regionalmoderate expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7960
Entity Detected:Yars2, tyrosyl-tRNA synthetase 2 (mitochondrial) ( MGI:1917370)
Sequence:sense strand is shown

>T7960
AGATGGCGGCGCCCATGCTGAGGCGCCTGTGCCGCGTTCCGCAGTCCCTGGTCTGGCTACGAGGGTCGCG
TGCGGTGCGCCCGGGCGCGCGGGGAATGCTGGTGGCACCGAGGGCCCGCGGCTTGTTCAAGGAGTTCTTC
CCCGAGAGCGGCACGAAGACAGAGCTCCCCGAACTCTTTGACCGCCGCAGGGCGGGCTCGTCCCCCCAGA
CGGTGTACTGCGGCTTCGACCCCACGGGCGACTCGCTCCACGTGGGGCACCTGCTAACTCTGTTGGGGCT
CTTCCACTTCCAGCGAGCCGGCCACAACGTGATCGCGCTCGTGGGAGGCTCCACGGCCCTCCTGGGGGAC
CCCAGCGGCCGGACCAAGGGGCGCGAGGCGCTGAGCGCCGAGTGCGTGCGGGCCAACGCGCACGCCCTGC
GGCGAGGGCTCGAGGCCCTGGCGGCCAACCACGCGCGCCTCTTCGCGGACGGCCGGCCCTGGGGCTCTTT
CACGGTGCTGGACAACGCGGCCTGGTTCCAGGAGCAGCACCTGGTGGATTTCCTGGCCACGGTGGGCGGC
CACTTCCGCATGGGCACTCTGCTGAGCCGGCTGAGCGTGCAGTCGCGTCTCAAGAGCCCCGAGGGCATGA
GCTTGGCGGAGTTCTTTTACCAGGTGCTCCAGGCCTATGACTTCTACTACCTTTTCCAGCACTATGGATG
CCGGGTCCAACTGGGCGGATCAGATCAGTTGGGCAACATCATGTCTGGCTACGAGTTCATCCACAAGTTG
ACTGGAGAGGATGTGTTTGGAATCACTGTACCTCTAATTACAAGTACAACTGGAGCAAAGCTGGGAAAGT
CTGCTGGCAATGCGGTTTGGCTAAACAGAGAGAAAACATCACCGTTTGAACTTTATCAGTTCTTTGTCAG
ACAGCAAGATGATTCCGTAGAAAGGTACCTGAAGCTTTTCACTTTCCTTCCCCTCCCAGAGATCGATCAC
ATCATGCAGCTACATGTCAAAGAACCAGAAAAGCGAGTTGCTCAGAAACGACTTGCTGCAGAAGTAACAA
AGCTTGTTCACGGACAAGAAGGTCTGGACTCTGCTAAAAGGTGTACACAAGCCCTTTACCATAGCAGCAT
AGAGGCACTGGAGGTCATGTCTGACCAAGAGTTAAAAGAATTGTTTAAAGAAGCTTCATTTTCTGAATTA
GTTCTTGATCCTGGAACGAGTGTCATAGACACATGCCGTAAAGCAAATGCCATTCCTGATGGCCCTCGAG
GGTATCGGATGATAACAGAAGGTGGAGTCAGTATAAATCACAGACAGGTAACAAATCCTGAAAGTGTTCT
AGTAATTGGACAACATATTCTCAAGAATGGACTTTCCTTACTTAAAATAGGAAAAAGGAATTTCTACATT
ATAAAATGGCTTCAGTTGTGAAAGGTTTTGTCCAAATTTGTCCATCATCCATTTTCAAAATGTGGAGGTC
TTCGGAAACCCAAGAGTGGAATATACACAAGGCCCCTCACAATGTAAATACTCATGTGCATTTCAAAATA
AAATGTTACTTAATTGTAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30290485 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30290485 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11628 same embryo
 EMAGE:11630 same embryo
 EMAGE:11627 same embryo
 EMAGE:11629 same embryo
 EMAGE:11632 same embryo
 EurExpress:euxassay_006559 same experiment
 MGI:4829250 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS