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EMAGE:11714

Sin3a transcriptional regulator, SIN3A (yeast) ( MGI:107157)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11714 EMAGE:11714 EMAGE:11714 EMAGE:11714 EMAGE:11714
"Pseudo-wholemount" of euxassay_008273. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_008273_01 euxassay_008273_02 euxassay_008273_03 euxassay_008273_04
EMAGE:11714 EMAGE:11714 EMAGE:11714 EMAGE:11714 EMAGE:11714
euxassay_008273_05 euxassay_008273_06 euxassay_008273_07 euxassay_008273_08 euxassay_008273_09
EMAGE:11714 EMAGE:11714 EMAGE:11714 EMAGE:11714 EMAGE:11714
euxassay_008273_10 euxassay_008273_11 euxassay_008273_12 euxassay_008273_13 euxassay_008273_14
EMAGE:11714 EMAGE:11714 EMAGE:11714 EMAGE:11714 EMAGE:11714
euxassay_008273_15 euxassay_008273_16 euxassay_008273_17 euxassay_008273_18 euxassay_008273_19
EMAGE:11714 EMAGE:11714 EMAGE:11714 EMAGE:11714
euxassay_008273_20 euxassay_008273_21 euxassay_008273_22 euxassay_008273_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11714Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11714_wholemount_strong.wlz
11714_wholemount_moderate.wlz
11714_wholemount_weak.wlz
11714_wholemount_possible.wlz
11714_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11714_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9262
Entity Detected:Sin3a, transcriptional regulator, SIN3A (yeast) ( MGI:107157)
Sequence:sense strand is shown

>T9262
GGCCTGTGACCGCTTCGTGGGCGCAAAGGAGGTTGCCAGTCCGCTCTTGCGGGCCTGTGCCCGCGCCGTT
CCGGGGCCTCCGTGCTGGGTGCGAGGCTCACGCCGGGAGCGACGCACAGGCTGAGTGGCTGGAGCTTTTG
CGGTTTGTAGTGCATCCCTGAGCATGAGTGCAGAATGAAGCGACGTTTGGATGACCAGGAATCACCAGTG
TATGCAGCCCAGCAGCGAAGGATTCCTGGGAGCACAGAGGCTTTTTCTCACCAGCACCGGGTCCTTGCCC
CGGCCCCTCCTGTGTATGAAGCAGTGTCTGAGACCATGCAGTCAGCTACAGGCATTCAGTACTCAGTGGC
ACCCAACTACCAGGTTTCAGCTGTGCCACAAAGTTCTGGCAGTCATGGGCCCGCCATAGCAGCAGTTCAT
AGCAGCCATCATCACCCAACAGCTGTCCAGCCTCATGGAGGCCAGGTGGTCCAGAGCCATGCCCACCCAG
CACCACCAGTTGCACCAGTACAGGGACAGCAGCAGTTTCAGAGGCTCAAGGTGGAAGACGCCCTGTCCTA
TCTTGACCAGGTGAAACTGCAGTTCGGTAGTCAGCCTCAGGTCTACAATGATTTCCTTGACATCATGAAG
GAATTTAAATCTCAGAGCATTGATACTCCAGGAGTGATTAGCCGAGTGTCCCAGCTATTTAAAGGCCACC
CTGATCTGATCATGGGCTTTAACACCTTCTTGCCTCCTGGCTACAAAATTGAGGTGCAGACTAATGACAT
GGTGAACGTGACAACACCTGGCCAAGTTCATCAGATTCCCACCCATGGCATCCAGCCCCAGCCTCAGCCA
CCACCTCAGCATCCTTCCCAGCCTTCATCCCAGTCAGCTCCCACTCCTGCTCAGCCAGCTCCTCAGCCCA
CAGCTGCCAAAGTCAGCAAGCCTTCCCAACTACAAGCACATACTCCAGCCAGTCAGCAGACTCCCCCACT
CCCACCATATGCATCCCCACGTTCTCCACCAGTCCAGCCTCACACACCAGTGACAATCTCCTTGGGGACA
GCTCCATCTTTGCAAAACAATCAGCCTGTGGAGTTTAATCATGCCATCAACTATGTTAATAAGATCAAGA
ACAGATTCCAGGGCCAACCAGACATCTACAAAGCATTCTTGGAGATTTTGCACACATACCAGAAAGAACA
GCGGAATGCCAAGGAAGCTGGAGGAAACTACACTCCAGCTTTGACTGAGCAAGAGGTGTATGCCCAGGTG
GCTCGACTCTTCAAAAACCAGGAAGATTTGTTGTCTGAATTTGGACAGTTCCTGCCAGATGCCAACAGCT
CAGTGCTTTTAAGCAAAACAACTGCTGAGAAGGTTGATTCTGTGAGAAATGACCATGGAGGCACTGTGAA
GAAGCCCCAACTGAATAACAAGCCACAGAGGCCCAGTCAGAATGGCTGCCAGATCCGCAGGCACTCTGGA
ACAGGAGCCACACCTCCAGTGAAGAAAAAACCCAAACTGATGAGTCTAAAAGAGTCTTCAATGGCAGATG
CCAGCAAGCATGGTGTTGGAACGGAATCATTATTTTTTGATAAGGTTCGAAAGGCTCTTCGGAGTGCAGA
GGCCTATGAAAACTTCCTTCGTTGCCTTGTTATCTTTAATCAGGAGGTGATCTCTCGGGCCGAGCTTGTA
CAGCTAGTCTCTCCTTTTCTGGGGAAATTCCCTGAATTGTTTAATTGGTTTAAAAACTTTTTGGGCTATA
AGGAGTCTGTACATCTGGAAAGCTTTCCAAAGGAACGAGCTACAGAAGGCATTGCCATGGAGATAGACTA
TGCCTCTTGTAAACGACTGGGCTCTAGCTACCGAGCCCTACCGAAAAGTTACCAGCAGCCCAAGTGCACG
GGACGGACTCCTCTGTGTAAAGAGGTTTTAAATGATACCTGGGTTTCCTTCCCATCTTGGTCTGAAGACT
CCACTTTTGTTAGTTCCAAGAAGACTCAGTATGAAGAACATATTTACCGTTGTGAAGATGAACGATTTGA
GCTTGATGTGGTTCTTGAGACCAATCTTGCAACAATCCGGGTTTTAGAAGCAATACAGAAAAAACTTTCT
CGCTTGTCTGCTGAGGAACAAGCCAAATTTCGCTTGGATAACACCCTTGGAGGCACGTCCGAAGTCATCC
ATCGAAAAGCACTCCAGAGGATATATGCTGACAAAGCAGCTGATATCATCGATGGCCTGAGGAAGAACCC
CTCCATTGCTGTTCCGATTGTCCTTAAAAGGTTGAAGATGAAAGAAGAAGAGTGGCGAGAAGCTCAGAGA
GGCTTCAACAAGGTCTGGCGAGAGCAAAATGAGAAGTACTACTTGAAGTCTCTGGATCACCAAGGCATCA
ACTTCAAGCAGAACGACACTAAGGTCTTGAGGTCTAAGAGCTTACTCAATGAGATCGAGAGCATCTATGA
CGAGAGGCAAGAGCAGGCTACAGAAGAGAACGCTGGTGTACCTGTTGGCCCGCACCTCTCTCTTGCCTAT
GAAGACAAACAGATACTAGAAGATGCTGCTGCTCTGATTATCCACCATGTGAAGAGGCAAACAGGCATTC
AGAAAGAGGACAAATACAAAATCAAGCAAATCATGCACCATTTCATTCCTGACCTGCTGTTTGCTCAGAG
AGGCGATCTCTCAGATGTGGAAGAAGAGGAGGAGGAAGAAATGGATGTGGATGAAGCAACAGGAGCACCT
AAGAAGCACAATGGTGTTGGGGGCAGCCCCCCTAAGTCCAAGTTGCTATTTAGTAACACAGCAGCTCAAA
AGTTAAGAGGGATGGATGAAGTATATAACCTTTTCTATGTCAATAACAATTGGTATATCTTTATGCGACG
GCATCAAATTCTCTGCTTGAGGCTGCTACGGATTTGTTTCCAAGCTGAACGGCAAATTGAAGAAGAAAAC
CGAGAGAGAGAATGGGAACGGGAGGTGCTAGGCATAAAGCGAGACAAGAGTGATAGTCCTGCCATACAAC
TACGTCTCAAGGAACCTATGGATGTTGATGTAGAAGATTATTACCCAGCTTTCCTGGACATGGTGCGGAG
CCTGCTTGATGGCAACATAGACTCATCACAGTATGAAGATTCACTGAGAGAGATGTTCACCATTCATGCC
TACATTGCCTTTACTATGGACAAATTAATCCAGAGCATCGTCAGACAGCTACAGCACATCGTCAGCGACG
AGGTCTGTGTGCAGGTTACTGATCTTTACTTGGCAGAAAACAATAACGGAGCCACGGGAGGCCAGCTCAA
CAGTCAGACTTCAAGGAGCCTTCTGGAGTCAGCATACCAGCGGAAGGCAGAGCAGCTTATGTCAGATGAG
AACTGCTTCAAGCTAATGTTCATTCAAAGTCAAGGTCAAGTTCAGCTGACTGTTGAGCTCCTGGACACAG
AAGAGGAGAACTCAGATGACCCCGTGGAAGCAGAGGTGTGGACACGTTGGTCAGACTACGTGGAGCGATA
TATGAGTTCTGATACTACTTCTCCTGAACTTCGAGAACATCTGGCACAGAAACCAGTATTTCTCCCAAGG
AATTTGCGGCGTATCCGGAAGTGTCAACGTGGTCGAGAGCAACAGGAAAAAGAAGGGAAAGAAGGAAACA
GCAAGAAGACCATGGAAAATGTAGAGGGCCTGGTACCCTGCACCACCACCTGTGATACAGAGACTCTGCA
CTTTGTGAGCATTAACAAATATCGTGTCAAATACGGCACAGTATTCAAAGCCCCTTAACTGCAGAGCCAG
AGCAGGTAGCTCAGAGGTGTGTGTGTGTGTATGTGTGTGAATATGTGTGTGTATGTGTGTGTGTGGGGGC
ATGTGTACTCATGTACACTGAAGAATCAAGGAAGATGCCTTTCAAGCCACCAGTGCAACCAGGCACCAGC
AGGATACACGAAAGGAATGCGAATGGATGGATACCTTAGGAAGCTGGAACTGGCACTTTTCCCACGGGTA
CTACCCAGACCCAACAGGGAATGAAGTCCATGCAAGCACAGAGACAGGCAGCTTGCTTGCACACACCAGC
AGAGCTCAACTACAACTTCCTATGACCTGAGCAACCAGATGCTGTCCCCATTTGGATGGATGGATGGATG
GAGGTGCATCTTGTCACTGCTCCTTTTCCCACCTCCAAAAAAGAGAGGGGAGGGGAGCCAGGATTTGATG
ATACCCTGACTTGAGCACAGCTAAGATCTCTGTTAGATTTTATCTGAGACCTGTTTGGCTTTGGAATTAA
TAACTTATGGATTTGGTTTCTGAGTCCTTGAAGTTCACCTTCTTCCCTCTTCTGGTTCTCGGCCTCAACA
AATTCCAGTCAGTCCTCCTTTTTAGCTCCCATGGGACTGTTTTGTACCTGCTTCTTTACTAGTCTGCCCT
AGTGCCATCCACCAGCTTCTCTCTCACACGCACACATGCACACACACACAATTTTAACTTGGTTTTTCTT
TTTTGTAAATAATGTACATACTGTCAATTTTTTATTAAAGAAATATGCTTTGATGTGCTAGCATAACTGC
TCTAGCTTCTTGTGTACCATAGTACCATGTGGCTTCAGATTTAGTACCTATAAACAGATGTACAAGACAT
TTATTACACTTTTTACCAAAGGGAGATACCATTGTAGTACTTTTGTGTAAAACTTGTCTTTCCCCCAACA
ACTTACTTTCTTTTTCCTTTTTTTTTTTTTTTAAATGTAAATAAAGCTTGATTCTTAAGGAAATAAGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6837144 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6837144 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11715 same embryo
 EurExpress:euxassay_008273 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS