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EMAGE:11803

Ttc35 tetratricopeptide repeat domain 35 ( MGI:1913986)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11803 EMAGE:11803 EMAGE:11803 EMAGE:11803 EMAGE:11803
"Pseudo-wholemount" of euxassay_007070. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007070_01 euxassay_007070_02 euxassay_007070_03 euxassay_007070_04
EMAGE:11803 EMAGE:11803 EMAGE:11803 EMAGE:11803 EMAGE:11803
euxassay_007070_05 euxassay_007070_06 euxassay_007070_07 euxassay_007070_08 euxassay_007070_09
EMAGE:11803 EMAGE:11803 EMAGE:11803 EMAGE:11803 EMAGE:11803
euxassay_007070_10 euxassay_007070_11 euxassay_007070_12 euxassay_007070_13 euxassay_007070_14
EMAGE:11803 EMAGE:11803 EMAGE:11803 EMAGE:11803 EMAGE:11803
euxassay_007070_15 euxassay_007070_16 euxassay_007070_17 euxassay_007070_18 euxassay_007070_19
EMAGE:11803 EMAGE:11803 EMAGE:11803 EMAGE:11803
euxassay_007070_20 euxassay_007070_21 euxassay_007070_22 euxassay_007070_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11803Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11803_wholemount_strong.wlz
11803_wholemount_moderate.wlz
11803_wholemount_weak.wlz
11803_wholemount_possible.wlz
11803_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11803_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6390
Entity Detected:Ttc35, tetratricopeptide repeat domain 35 ( MGI:1913986)
Sequence:sense strand is shown

>T6390
CCGGGTTCTAGGAAGATGGCGAAGGTCACTGAGCGTTACGATGTGACTTGGGAAGAAATGCGAGATAAAA
TGAGAAAATGGCGAGAAGAAAACTCAAGAAATAGTGAACAAATTATGGAAGTTGGAGAAGAATTAATTAA
TGATTATGCTTCTAAGCTTGGGGATGACATTTGGATCATATATGAGCAGGTCATGATTGCAGCCCTAGAC
TATGGTCGGGATGACTTGGCATTGTTTTGTCTTCAGGAATTAAGAAGACAATTCCCTGGTAGTCACAGAG
TTAAGCGGTTAACAGGCATGCGATTTGAAGCTATGGAAAGATATGACGATGCTATACAACTGTATGATCG
GATTTTGCAAGAAGATCCAACTAACACTGCTGCCAGAAAGCGTAAGATTGCCATTCGAAAAGCCCAGGGG
AAAACCGTAGAGGCCATCCGAGAGCTGAATGAGTATCTGGAGCAGTTTGTTGGAGACCAAGAAGCCTGGC
ATGAACTTGCAGAACTTTATATCAATGAACACGACTATGCCAAAGCAGCTTTTTGCTTAGAGGAGCTGAT
GATGACAAATCCACATAACCACTTATACTGTCAGCAGTATGCAGAAGTCAAATACACCCAAGGTGGACTT
GAAAACCTCGAGCTTTCAAGAAAGTATTTTGCACAGGCCCTGAAACTCAACAACAGGAACATGAGAGCTC
TGTTTGGGCTTTACATGTCTGCAAGTCATATTGCTTCTAATCCAAAAGCAAGTGCAAAAATGAAAAAAGA
CAACATCAAATATGCTAGTTGGGCCGCTAATCAAATAAACAGGGCTTATCAGTTTGCAGGTCGAAGTAAG
AAGGAAACCAAATACTCTCTTAAGGCAGTTGAAGACATGTTGGAGACATTGCAGATCACTCAGTCTTGAG
GTTTCAGGAACCCATTTGACGTTAGATTTCAAACTACACAGTTGAACTTTTTGGCCTGTGACTGAATTTA
CTAAATATCTAGTGCTATTTGTATTCTAATTTTCTCTGAAGAGGTTGTTATAAAGAATGTTTAACTAAAC
CTCAGCTTGCCTTGTACTGCTAGGAAGCAGGGAGATGGAGGTAATCCATGGGACAGAGATTTAAGACCTA
TTGATTGTATATCCATCCTCGTATATCACCCCTACACCTTATTAAATAAACCATGGTTTATTAAACTCAA
AAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3582196 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3582196 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11801 same embryo
 EMAGE:11802 same embryo
 EMAGE:11804 same embryo
 EMAGE:11799 same embryo
 EMAGE:11800 same embryo
 EurExpress:euxassay_007070 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS