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EMAGE:11838

Phax phosphorylated adaptor for RNA export ( MGI:1891839)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11838 EMAGE:11838 EMAGE:11838 EMAGE:11838 EMAGE:11838
euxassay_006927_01 euxassay_006927_02 euxassay_006927_03 euxassay_006927_04 euxassay_006927_05
EMAGE:11838 EMAGE:11838 EMAGE:11838 EMAGE:11838 EMAGE:11838
euxassay_006927_06 euxassay_006927_07 euxassay_006927_08 euxassay_006927_09 euxassay_006927_10
EMAGE:11838 EMAGE:11838 EMAGE:11838 EMAGE:11838 EMAGE:11838
euxassay_006927_11 euxassay_006927_12 euxassay_006927_13 euxassay_006927_14 euxassay_006927_15
EMAGE:11838 EMAGE:11838 EMAGE:11838 EMAGE:11838 EMAGE:11838
euxassay_006927_16 euxassay_006927_17 euxassay_006927_18 euxassay_006927_19 euxassay_006927_20
EMAGE:11838 EMAGE:11838 EMAGE:11838
euxassay_006927_21 euxassay_006927_22 euxassay_006927_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11838Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11838_wholemount_strong.wlz
11838_wholemount_moderate.wlz
11838_wholemount_weak.wlz
11838_wholemount_possible.wlz
11838_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11838_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9939
Entity Detected:Phax, phosphorylated adaptor for RNA export ( MGI:1891839)
Sequence:sense strand is shown

>T9939
GCTCTCCTGACCCTGCGCGCCGCGGGAAGATGGCGCTGGAAGCTGGCGACATGGAAGAGGGGCAGCTTTC
CGACTCGGATTCCGACATGACGGTCGTCCCCAGCGATAGGCCTCTGCAAATGGCGAAAGTCCTAGGTGGG
GGCAGCGCTGCGTGCGCACCGGTGTCACATTATCGGACTGTTAAACATGTGGACTCCAGCGAGGAGAGTC
TAGATTCCGATGACGATTGCTCTCTTTGGAAACGCAAGCGACAGAAGTGTCATAATACTCCTCCCAAGCC
AGAGCCTTTCCCATTTGGACCAAGTGGTCAGAAAACGGCTCTCAACGGAGGAAAGAAGGTGAACAACATC
TGGGGCGCGGTGCTCCAGGAACAGAATCAAGATGCGGTGGCCACTGAACTCGGCATCTTGGGAATGGAAG
GCTCCATTGACAGAAGCAGGCAGTCTGAGACCTATAACTATTTGCTTGCTAAGAAACTTGCTAAGAAGGA
ATCTCAAGAGTACACAAAGGAATTAGACAAAGATCTAGATGAATATATGCATGGTGACAAAAAACCAGGG
TCAAAGGAAGACGAGAATGGGCAAGGTCACCTCAAGCGGAAACGACCTGTCAGAGACAGACTGGGTAACA
GAGTGGAAATGAACTACAAAGGGCGCTATGAGATCACAGAAGAGGATGCTCCCGAGAAAGTAGCCGATGA
GATCGCCTTCAGGTTGCAGGAACCCAAGAAGGACCTGATAGCCCGAGTAGTGAGGATACTTGGGAACAAA
AAGGCCATTGAACTTCTGATGGAAACAGCTGAAGTCGAGCAAAATGGTGGTCTTTTCATAATGAATGGTA
GCCGAAGAAGAACACCCGGTGGAGTCTTTCTGAATCTCCTGAAGAACACACCCAGCATCAGCGAGGAACA
GATTAAGGACATTTTCTACGTTGAAAATCAAAAGGAATATGAAAATAAAAAAGCTGCTAGAAAAAGAAGA
ACACAGCTTTTGGGGAAGAAAATGAAACAAGCTATTAAAAGTCTGAACTTCCAGGAGGACGATGACACAT
CTCGAGAAACGTTTGCAAGTGACACTAATGAGGCCCTGGCCTCTCTCGACGAAGCCCAGGAAGGACCTGG
CGAGACCAAGCTGGATGCTGAGGAGGCCATTGAGGTGGACCACCCTCAGGACTTGGACATCTTCTGAGCA
CACTGGGGACATTTTGAAGAATAAACCTTTGTTTAAAAAGTTGTTACCATTTCTACTGAGGTTGCTTTAC
TGTGTACTGAGACTAGAGAAAGGGGCGCTGTTCCTGTTTTCTGTGTATGTGATGTATGTGGACAGGGGTG
CGCTCGGCAGCAGCGTGGAGGGAGGGCTGTGTCTCTCGGTGCACGGCACGGGTTAAATCTCATTCTGTGG
CATGTGCTGTCTGTTAGCCTGAGTGGGGCTGTGACCTCTGTTCAGCCCACTGTTTCATGCCATTAAGACA
CTTCGGTTTTCTGACTCATCTTGGTGAACTATGCTTTGGTTTTAACACATTCCATTAAAATATCCTGTAA
CATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30303763 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30303763 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11837 same embryo
 EMAGE:11839 same embryo
 EurExpress:euxassay_006927 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS