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EMAGE:11989

Lcn2 lipocalin 2 ( MGI:96757)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11989 EMAGE:11989 EMAGE:11989 EMAGE:11989 EMAGE:11989
"Pseudo-wholemount" of euxassay_011036. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_011036_01 euxassay_011036_02 euxassay_011036_03 euxassay_011036_04
EMAGE:11989 EMAGE:11989 EMAGE:11989 EMAGE:11989 EMAGE:11989
euxassay_011036_05 euxassay_011036_06 euxassay_011036_07 euxassay_011036_08 euxassay_011036_09
EMAGE:11989 EMAGE:11989 EMAGE:11989 EMAGE:11989 EMAGE:11989
euxassay_011036_10 euxassay_011036_11 euxassay_011036_12 euxassay_011036_13 euxassay_011036_14
EMAGE:11989 EMAGE:11989 EMAGE:11989 EMAGE:11989 EMAGE:11989
euxassay_011036_15 euxassay_011036_16 euxassay_011036_17 euxassay_011036_18 euxassay_011036_19
EMAGE:11989 EMAGE:11989 EMAGE:11989 EMAGE:11989 EMAGE:11989
euxassay_011036_20 euxassay_011036_21 euxassay_011036_22 euxassay_011036_23 euxassay_011036_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11989Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11989_wholemount_strong.wlz
11989_wholemount_moderate.wlz
11989_wholemount_weak.wlz
11989_wholemount_possible.wlz
11989_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11989_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
liver lobe
strong strong
single cellstrong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T36584
Entity Detected:Lcn2, lipocalin 2 ( MGI:96757)
Sequence:sense strand is shown

>T36584
CCCAGGACTCAACTCAGAACTTGATCCCTGCCCCATCTCTGCTCACTGTCCCCCTGCAGCCAGACTTCCG
GAGCGATCAGTTCCGGGGCAGGTGGTACGTTGTGGGCCTGGCAGGCAATGCGGTCCAGAAAAAAACAGAA
GGCAGCTTTACGATGTACAGCACCATCTATGAGCTACAAGAGAACAATAGCTACAATGTCACCTCCATCC
TGGTCAGGGACCAGGACCAGGGCTGTCGCTACTGGATCAGAACATTTGTTCCAAGCTCCAGGGCTGGCCA
GTTCACTCTGGGAAATATGCACAGGTATCCTCAGGTACAGAGCTACAATGTGCAAGTGGCCACCACGGAC
TACAACCAGTTCGCCATGGTATTTTTCCGAAAGACTTCTGAAAACAAGCAATACTTCAAAATTACCCTGT
ATGGAAGAACCAAGGAGCTGTCCCCTGAACTGAAGGAACGTTTCACCCGCTTTGCCAAGTCTCTGGGCCT
CAAGGACGACAACATCATCTTCTCTGTCCCCACCGACCAATGCATTGACAACTGAATGGGTGGTGAGTGT
GGCTGACTGGGAT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 63970. Forward Primer - name:063970_F_cDNA_Lcn2, sequence:CCCAGGACTCAACTCAGAACTT; Reverse Primer - name:063970_N_SP6_cDNA_Lcn2, sequence:ATCCCAGTCAGCCACACTCAC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11992 same embryo
 EMAGE:11988 same embryo
 EMAGE:11991 same embryo
 EMAGE:11990 same embryo
 EMAGE:11993 same embryo
 EurExpress:euxassay_011036 same experiment
 MGI:4825886 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS