EMAGE mouse gene expression spatial database

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EMAGE:12060

Nudt19 nudix (nucleoside diphosphate linked moiety X)-type motif 19 ( MGI:94203)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_008589. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_008589_01	euxassay_008589_02	euxassay_008589_03	euxassay_008589_04

euxassay_008589_05	euxassay_008589_06	euxassay_008589_07	euxassay_008589_08	euxassay_008589_09

euxassay_008589_10	euxassay_008589_11	euxassay_008589_12	euxassay_008589_13	euxassay_008589_14

euxassay_008589_15	euxassay_008589_16	euxassay_008589_17	euxassay_008589_18	euxassay_008589_19

euxassay_008589_20	euxassay_008589_21	euxassay_008589_22	euxassay_008589_23	euxassay_008589_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12060_wholemount_strong.wlz

12060_wholemount_moderate.wlz

12060_wholemount_weak.wlz

12060_wholemount_possible.wlz

12060_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12060_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

pancreas

moderate

regional

moderate expression: see section 09 10 11 12 13 14

hindgut

moderate

regional

moderate expression: see section 14 15 16 17

midgut

moderate

regional

moderate expression: see section 13 14 15 16 17 18 19 20 weak expression: see section 11 12

liver left lobe

moderate

regional

moderate expression: see section 01 02 03 04 05 06 07 08 09 10 11 weak expression: see section 12

liver right lobe

moderate

regional

moderate expression: see section 13 14 15 16 17 18 19 20 21 22 23 24

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T36251
Entity Detected:	Nudt19, nudix (nucleoside diphosphate linked moiety X)-type motif 19 ( MGI:94203)
Sequence:	sense strand is shown >T36251 GCACCACCACAGTTCTATGAAATGAGAAGACTTGAAAACTTTGCCTCTCTCTCTGCTCTGTATAGATTTT GTTCGGATCGCCCATCAGAAGTACCTGAGAAATGGCTGCCAATAATACTTTTAACTTCTGATGGCACCAT CCATCTTCTCCCAGGAGATGAGCTGTATGTGAAAGACTCAGACTTCTTGGAAAAGAATATGTCTACTGAC AAAAAGACTGAAGAAATCGTGAAGGAAGGCAAAGTCCTTAACCGAGTTGTGATCCACAGTCCCTATGTGT ACGAAATCTACATGACTCTTCCGTCAGAGAATAAGCACGTGTACCCTAGGAACTACATAGTGAATAAGAG ATATACTGCCCACCTGTAAGCCGCACTACTTATGTACTGTTAGCAAATAATGAAGATTGACTGAACCTGT CTAAAAATCTAAGGAATGTACCCATAAAAGTCACAATGAGGTGTTACCTGTGTCATGTGTGTTTTGGGAG CCTCTGCCATTTGTCAGACTGCACAGCAAGCCAAATGTAGAATGGACGAAGTAGTAAAGCTCTTGTCACC AAGATGAACGGTTTCACGACAGTTGTTTTATTAGTTGAACATTGGAAAGTGGTCTCCTGCCATCCTCTAA CTGTCCCACGCGTTAGCGGTTTCCTGGTGCGCTGTGGAGACTGAGCCCTGGCTCTCTTACACTTTCGCAG GAATTGATTCC
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 91949. Forward Primer - name:091949_F_cDNA_D7Rp2e, sequence:GCACCACCACAGTTCTATGAAA; Reverse Primer - name:091949_N_SP6_cDNA_D7Rp2e, sequence:GGAATCAATTCCTGCGAAAGT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12057 same embryo
	EMAGE:12059 same embryo
	EMAGE:12058 same embryo
	EMAGE:12055 same embryo
	EMAGE:12056 same embryo
	EurExpress:euxassay_008589 same experiment
	MGI:4826828 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source