EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:1224

Hlcs holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) ( MGI:894646)
TS17 (10.5 dpc)
in situ hybridisation

Data Images


HLCSe10.5

Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

1224_wholemount_strong_3D_1.wlz

1224_wholemount_possible_3D_1.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:1224_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

embryo

detected

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:272688
Entity Detected:	Hlcs, holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) ( MGI:894646)
Sequence:	sense strand is shown >MGI:272688 GAATTCATGTCTTACGGTCAAGGCAGAGGGCCCAGCGCCACTGCAGCCGCGCCACCTCCCAGGGCCGGGC CAGCCCAGGCGTCCGCGCTCTCGGGGTGGACTCCCCCCGCTGCGCGCTCAAGCCGGCGATGGCTCCTCTC GGATACCTCTTAGTGCTCTGCAGCCTGAAGCAGGCTCTGGGCAGCTACCCGATCTGGTGGTCCTTGGCTG TGGGACCCCAGTACTCCTCTCTGAGCACTCAGCCCATTCTCTGTGCCAGCATCCCAGGCCTGGTACCGAA GCAGCTGCGCTTCTGCAGGAACTACGTGGAGATCATGCCCAGCGTGGCTGAGGGTGTCAAAGCGGGCATC CAGGAGTGCCAGCACCAGTTCCGAGGCCGGCGTTGGAACTGCACCACCGTCAGCAACAGCCTGGCCATCT TTGGCCCTGTTCTGGACAAAGCCACCCGGGAGTCAGCCTTTGTCCATGCCATCGCCTCCGCTGGAGTAGC TTTCGCAGTGACACGCTCCTGTGCAGAGGGATCAGCTGCTATCTGTGGGTGCAGCAGCCGCCTCCAGGGC TCCCCAGGCGAGGGCTGGAAGTGGGGCGGCTGTAGTGAGGACATTGAATTTGGAGGAATGGTCTCTCGGG AGTTTGCCGATGCCAGGGAGAACCGGCCGGATGCCCGCTCTGCCATGAACCGTCACAACAATGAGGCTGG GCGCCAGGCCATCGCCAGTCACATGCACCTCAAGTGCAAATGCCACGGGCTATCTGGCAGCTGTGAAGTG AAGACCTGCTGGTGGTCGCAGCCGGACTTCCGCACCATCGGGGATTTCCTCAAGGACAAGTATGACAGTG CCTCGGAGATGGTGGTAGAGAAACACCGAGAGTCTCGTGGCTGGGTGGAGACCCTGAGGCCACGTTACAC GTACTTCAAGGTGCCGACAGAACGCGACCTGGTCTACTACGAGGCCTCACCCAACTTCTGCGAACCTAAC CCCGAAACCGGCTCCTTCGGGACGCGTGACCGCACCTGCAATGTGAGCTCGCATGGCATAGATGGGTGCG ACCTGTTGTGCTGCGGGCGCGGGCATAACGCGCGCACTGAGCGACGGAGGGAGAAATGCCACTGTGTTTT CCATTGGTGCTGCTACGTCAGCTGCCAGGAGTGCACACGTGTCTATGACGTGCACACCTGCAAGTAGGAG AGCTCCTAACACGGGAGCAGGGTTCATTCCGAGGGGCAAGGTTCCTACCTGGGGGCGGGGTTCCTACTTG GAGGGGTCTCTTACTTGGGGACTCGGTTCTTACTTGAGGGCGGAGATCCTACCTGTGAGGGTCTCATACC TAAGGACCCGGTTTCTGCCTTCAGCCTGGGCTCCTATTTGGGATCTGGGTTCCTTTTTAGGGGAGAAGCT CCTGTCTGGGATACGGGTTTCTGCCCGAGGGTGGGGCTCCACTTGGGGATGGAATTCCAATTTGGGCCGG AAGTCCTACCTCAATGGCTTGGACTCCTCTCTTGACCCGACAGGGCTCAAATGGAGACAGGTAAGCTACT CCCTCAACTAGGTGGGGTTCGTGCGGATGGGTGGGAGGGGAGAGATTAGGGTCCCTCCTCCCAGAGGCAC TGCTCTATCTAGATACATGAGAGGGTGCTTCAGGGTGGGCCCTATTTGGGCTTGAGGATCCCGTGGGGGC GGGGCTTCACCCCGACTGGGTGGAACTTTTGGAGACCCCCTTCCACTGGGGCAAGGCTTCACTGAAGACT CATGGGATGGAGCTCCACGGAAGGAGGAGTTCCTGAGCGAGCCTGGGCTCTGAGCAGGCCATCCAGCTCC CATCTGGCCCCTTTCCAGTCCTGGTGTAAGGTTCAACCTGCAAGCCTCATCTGCGCAGAGCAGGATCTCC TGGCAGAATGAGGCATGGAGAAGAACTCAGGGGTGATACCAAGACCTAACAAACCCCGTGCCTGGGTACC TCTTTTAAAGCTCTGCACCCCTTCTTCAAGGGCTTTCCTAGTCTCCTTGGCAGAGCTTTCCTGAGGAAGA TTTGCAGTCCCCCAGAGTTCAAGTGAACACCCATAGAACAGAACAGACTCTATCCTGAGTAGAGAGGGTT CTCTAGGAATCTCTATGGGGACTGCTAGGAAGGATCCTGGGCATGACAGCCTCGTATGATAGCCTGCATC CGCTCTGACACTTAATACTCAGATCTCCCGGGAAACCCAGCTCATCCGGTCCGTGATGTCCATGCCCCAA ATGCCTCAGAGATGTTGCCTCACTTTGAGTTGTATGAACTTCGGAGACATGGGGACACAGTCAAGCCGCA GAGCCAGGGTTGTTTCAGGACCCATCTGATTCCCCAGAGCCTGCTGTTGAGGCAATGGTCACCAGATCCG TTGGCCACCACCCTGTCCCGAGCTTCTCTAGTGTCTGTCTGGCCTGGAAGTGAGGTGCTACATACAGCCC ATCTGCCACAAGAGCTTCCTGATTGGTACCACTGTGAACCGTCCCTCCCCCTCCAGACAGGGGAGGGGAT GTGGCCATACAGGAGTGTGCCCGGAGAGCGCGGAAAGAGGAAGAGAGGCTGCACACGCGTGGTGACTGAC TGTCTTCTGCCTGGAACTTTGCGTTCGCGCTTGTAACTTTATTTTCAATGCTGCTATATCCACCCACCAC TGGATTTAGACAAAAGTGATTTTCTTTTTTTTTTTTTCTTTTCTTTCTATGAAAGAAATTATTTTAGTTT ATAGTATGTTTGTTTCAAATAATGGGGAAAGTAAAAAGAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAA
Notes:	none
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	CD1
Age:	10.5 dpc
Theiler Stage:	TS17
Mutations:	none (wild-type)
Preparation:	wholemount

Procedures

Fixation:	4% paraformaldehyde
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Principal investigator:	Valeria Marigo, TIGEM, Via Pietro Castellino 111, Naples, Italy 80131
Submitted by:	Cristina Caccioppoli, TIGEM, Via Pietro Castellino 111, Naples, Italy 80131
Experiment type:	screen
References:	[ doi:10.1038/nature01178] [ PMID:12466854] Reymond A, Marigo V, Yaylaoglu MB, Leoni A, Ucla C, Scamuffa N, Caccioppoli C, Dermitzakis ET, Lyle R, Banfi S, Eichele G, Antonarakis SE, Ballabio A 2002 Human chromosome 21 gene expression atlas in the mouse. Nature (420):582-6
Acknowledgments:	This data was produced as part of this consortium Human Chromosome 21 Expression 'Atlas' Telethon Institute of Genetics and Medicine Naples ; Max Planck Institute Hannover; Division of Medical Genetics Geneva, Naples, Hannover, Geneva, Italy, Germany, Switzerland
Links:	MGI:2666297 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source