EMAGE mouse gene expression spatial database

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EMAGE:12246

2610507B11Rik RIKEN cDNA 2610507B11 gene ( MGI:1919753)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007134. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007134_01	euxassay_007134_02	euxassay_007134_03	euxassay_007134_04

euxassay_007134_05	euxassay_007134_06	euxassay_007134_07	euxassay_007134_08	euxassay_007134_09

euxassay_007134_10	euxassay_007134_11	euxassay_007134_12	euxassay_007134_13	euxassay_007134_14

euxassay_007134_15	euxassay_007134_16	euxassay_007134_17	euxassay_007134_18	euxassay_007134_19

euxassay_007134_20	euxassay_007134_21	euxassay_007134_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12246_wholemount_strong.wlz

12246_wholemount_moderate.wlz

12246_wholemount_weak.wlz

12246_wholemount_possible.wlz

12246_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12246_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

adrenal medulla

strong

regional

strong expression: see section 07 08 09 16 17

brain

strong

homogeneous

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

facial vii ganglion

strong

regional

strong expression: see section 04 05 06 18 19

glossopharyngeal ix ganglion

strong

regional

strong expression: see section 06 07 16 17

trigeminal v ganglion

strong

regional

strong expression: see section 02 03 04 05 06 07 08 16 17 18 19 20

vagus x ganglion

strong

regional

strong expression: see section 08

vestibulocochlear viii ganglion

strong

regional

strong expression: see section 05 06 07 16 17

trigeminal v nerve

strong

regional

strong expression: see section 07 08 09 10 16 17 18

spinal cord

strong

homogeneous

strong expression: see section 08 09 10 11 12 13 14 15

cervico-thoracic ganglion

strong

regional

strong expression: see section 09 10 15

thoracic ganglion

strong

regional

strong expression: see section 11 12 13 14

dorsal root ganglion

strong

regional

strong expression: see section 06 07 08 09 10 11 15 16

not examined

regional

not examined expression: see section 01 02 03 20 21 22

neural retina

strong

regional

strong expression: see section 01 02 03 04 20 21 22

nasal cavity olfactory epithelium

strong

regional

strong expression: see section 08 09 10 11 12 14 15 16 17 18

nasal cavity respiratory epithelium

strong

regional

strong expression: see section 13 15

esophagus

strong

regional

strong expression: see section 12 13 14

stomach

strong

regional

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11

hindgut

strong

regional

strong expression: see section 12 13 14 15

midgut

strong

regional

strong expression: see section 08 09 10 11 12 13 14 15 16 17 18

genital tubercle of male

strong

regional

strong expression: see section 11 12 15

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9487
Entity Detected:	2610507B11Rik, RIKEN cDNA 2610507B11 gene ( MGI:1919753)
Sequence:	sense strand is shown >T9487 CGTCAGGGCCCGGCATGGCGGGGGTCGGGGCCAGGCCGGGCCGGACCCGGACCTAAATGCCTCTATTTCT CTCCGCGCTGTTGGTCTTGCTGCTGGTTGCGCTTAGCGCACTCTTCCTAGGCCGGTGGCTTGTGGTCCGG TTGGCCACCAGGTGGTGTCAGCGCAAGTTGCAGGCAGAGCTAAAGATTGGCTCCTTCCGATTTTTTTGGA TCCAGAATGTCAGTCTTAAGTTTCAGCAGCACCAGCAGACGGTGGAATTTGACAACTTGTGGATTTCCAG CAAACTCCTTAGCCATGATCTGCCAAACTATGTGGCATTGTGCTTTGGAGAAGTGCGCATCAGGACAGAT CTACAGAAGGTTTCTAGCCTGTCTGCCCCATTCTCTCAGAACACAGAGGTGGAGCAAAAGGAACTGTCCC TCAGCCCATCCTTGTTGAAGATCTTCTGCCAACTATTCTCCATTCATGTAGATGCCATAAACATCATGGT TCTTAAGGTGGCTACCTCTGAGTCCTTGTGGCACATCCAGATCAGTAGAAGCAGATTTCTTTTGGACAGT GATGGGAAGAGTCTCATCTGTAAAGTGAACCTATCAAAGATCAATAGCAAAGTCCTGAAGAGTGGTCAGC TGGAGGATACATGTCTGGTAGAGCTCTCACTGGCCCTGGACCTGCGCCTACAGGTCAGCGTCAGCAGTTG GCATCTGACGGCTGTCACTGTGGATGTGTGGACACTCCATGCTGAGCTGCATGAAGGTCTCTTCCATAGT CAGCTACTGTGTCATGCCCCAGGCCGGATTTCCAAATCAGTTTCTTGTTCAGATTTGACTGAGAACTTTG CTGAACCAACTCTGCCTGGCCTATACCTCCTCCAGCGGCTGCCAGACCAAGTCAAGGTGAAGATGGAGAA CACAAGTGTGGTGTTGTCTATGAACAGTCAAAAACGGCACTTGACTTGGACACTGAAGCTGCTGCATTTC CTGTACCACCGTGATGAGGACCAACTGCCGCTTCGAAGCTTCACAGCAAACTATGATATGGCACAGATGA GCACTGAACTCCTATTGGAAGATGGGTTGTTGCTGTCCCAGAGTCGCCAACGAATTGTCTGCCTCAACTC CCTCAAGGCTAATGTGCAGGTGACCACCATCGACCTCTCAGCTTCTCTAGTTCTGAACACCTGTATCATT CATTACCGACACCAGGAGTTCTCTCACTGGCTCCTTATGCTAGCACTGGAGACCCAAGGAGCCAGTTCAC CTGATCTTAAACAAAGAAAGAAAAGAACCTTCCCTCAGATCCTGGCTCCCATTATCTTCAGCACCTCAGT CTCCAATGTCAGCATTTCCATTCAGCTTGGAGATACACCACCGTTTGCTTTGGGGTTCAATTCCATCTCC CTGGACTACCAGCACCTCCGGCCACAAAGTATCCATCAGCGAGCAGTGCTAACTGTAGATCATCTCTGCT GGCGTGTGGGCAGTGACTCCCACATTCAGCGGGCACCACATCCACCTAATATGCATGTTTGGGGCGAAGC ACTTGTTCTGGATTCCTTCACACTACAGGGAAGTTATAACCAGCCCCTGGGCTTGTCCAGCACCCAGTCC AATACTCTTTTTCTTGACTGTACTATTCGAGGACTTCAGGTAGAAATATCAGACATCTGTGCCCAGTGTC TGTCTCGAGTCCTCTCCTTGGTGATTCCACAATCTGAAAGGTCAGCTGTCTCTAGGAAGTCGTCACTTGG GGAGTCTGTGACCTTACTGTGGAAGGTCGACTTGAAGGTGGAAGACATGAACCTGTTCACTCTTTCCGCA CTGGTTGGTGCTTCAGAGCTACGACTGGACACACTGACTGTCTTGGGTAGTGCTGAGACCTCCACTGTGG GGATTCAAGGACTTGTGCTTGCATTAGTAAAATCAGTCACAGAGAAGATGCAGCCCTGTTGCAAGGCTCC TGACATCCCCACGCCAGTGCTGGGTCTCTCCATGCTCTCCCTCACCTATCACAGCAGCATCCGCTCTCTA GAGGTTCAGTGTGGTGCAGGGCTGACTTTACTCTGGAGCCCCCCAGATCACATGTATCTGTACCAACATG TCAGGGCCACTCTACAGTGCCGAGACCTCTTACGAGCTACTGTGTTTCCTGAGATTATTGAGTCCCATTC ACTAAACACTCCACAGTCCACTTGGGAGCCAGAAGACCATCTCCCTGAGTCATCCCTGCCTAGGCGGCTG CTCACCCTGACCCTGGAGGTGAGCACTGCCAAGCTAACAGCTTTCGTGGCTGAGGACAAGTTCATTACCC TGGCTGCAGAGAGTGTGTCGCTGAACCGGCATGGAGGTTCACTGCAGGCTTACTGCCCCGAGTTGGCTGC TGGCTTTGATGGCAATAGCATCTTCAACTTGAAGGAGGTAGAGGTGCAGCTTCTGCCTGAGCTAGAAGAG ATGATCCTTCACAGGAACCCCTTCCCTGCGCTGCAGACCCTCCGCAATCGGGTTTGGCTTCTTTCCCTCG GATCAGTCTCAGTGGAGTTTCCTTATCAGTATGACTTCTCTCGAACTCTGGATGAGGCTGTGGGAGTTCA GAAATGGCTAAAGGGGCTGCATCGAGGGACTCATGCTTGGGCTTCTCCAAGCCCTGCCCCTCTTCCACCT GATTTACTCCTAAAGGTTCAGCACTTTTCTTGGGTTTTCCTGGATGACATCTTTGAGGTGAAACTTCATG ATAACTACGAACTGATGAAGGATGAAAGTAAGGAGAGTGCCAAAAGGCTGCAGTTGCTAGATGCCAAAGT GGCTGCCCTGCGAAAGCAGCATGGAGAGCTATTGCCAGCTCGGAAAATTGAGGAGCTCTACGCCTCTTTG GAACGCAAAAACATTGAAATCTACATCCAGCGCTCTCGTCGTCTCTATGGCAACACACCCATGCGCCGTG CACTGCTCACTTGGAGCCTGGCAGGGCTAGAGCTGGTGGCTCTAGCAGATGCATCCTTTCATGGGCCCGA GCATGTGATAGAGCAGGTTCGAGAACTTGATCCTGGAAGCCCTTTTCCTGCTGAAGGAATGGATCTTGTC ACTCAGTGGTGTCGTATGCTCAAGTGCAATGTCAAAACTTTTCTGGTTCGGATCAGAGACTATCCACGGT ACCTGTTTGAGATCCGGGACTGGCGGCTAATGGGTCGACTTGCGGGCACTGAGCAGAGTGGCCAGCCATG CTCCCGTCGACGTCAGATCCTGCACTTGGGGCTTCCCTGGGGTAACGTGGCAGTAGAAAGAAACATGCCC CCACTCAAGTTTTACCATGACTTCCACTCGGAAATCTTCCAGTACACAGTGGTGTGGGGCCCATGTTGGG ATCCAGCCTGGACACTGATTGGTCAGTGTGTGGACCTCTTGACTAAGCCTTCAGCTGACCCCAGCCCACC TTTGCCCTGGTGGGATAAGAGCCGTCTTCTGTTCCATGGGGACTGGCATATGGATATTGAACAAGCAAAC CTGCATCAGCTGGCCACTGAGGACCCCTATAATACAACTGAGAACATGCACTGGGAGTGGAGCCACCTTT CTTTTCATTGGAAACCTGGTCAGTTTGTGTTCAGAGGGGACCTGGATGTCAACGTAAGAACAGCTTCTAA GTATGACGACTGCTGCTTCCTTCACCTGCCTGACCTCTGCATGACACTGGACCTACAGTGGCTGTGCCAC GGGAATCCTCATGATCATCACAGTGTCACTCTGAGGGCCCCAGAGTTCCTGCCTGAGGTACCCTTGGGCC AGCTCCATGACTCCTACCGGGCCTTCCGCTCTGAGAACCTCAATCTCTCCATCAAGATGGATTTGACTCG CCATAGTGGGACAATATCCCAGCCCCGAATTCTGGTGTATAGTAGTACCCTGCGCTGGATGCAGAATTTC TGGGCAACTTGGACTAGCATCACAAGGCCTATCTGTAGAGGAAAACTGTTTAATAACTTGAAGCCCAGCA AGAAAAAACTTGGCCAGCACTACAAACAGCTTTCCTATACTGCACTGTTTCCCCAGCTACAGGTACATTA CTGGGCTTCCTTTGCCCAGCAACGGGGCATCCAGATTGAGTGCAGTCAGGGCCATGTCTTCACTCGGGGA ACTCAGCGGCTTATACCTCAAGCTGGCACAGTGATGCGGCGCCTTATTTCTGAGTGGAGTGTAACCCAGA TGGTGAGTGACTTAAGTCAGGTGACTGTTCATCTGATGGCTTCACCCACTGAAGAGAACGCTGACCACTG CCTTGATCCCTTGATCACAAAGACCCACCTATTGAGCCTGTCTTCCCTTACTTACCAACGGCACAGCAAT CGCACCACTGAAGAGGAGCTTTCTGCTCGAGATGGTGATCCTGCCTTTCATACACACCAGCTGTATTTGG TAGATTTACGGATTTCCTGGACAACCACCAATAGGGACATTGCCTTTGGCTTATATGATGGCTACAAAAA AGCAGCTGTACTCAAACGTAATCTCTCTACTGAGGCCCTGAAAGGTTTGAAGATTGATCCTCAGATGTCA GCCAAAAAGCCAAAGCGGGGTATCCCACCTAGTGCCCAAGTCCCACCTCATGTCAGCACTCCCAGCTTCA GTGGACGGCCTGATAAGGGATCATCAGGAGGTGCTTACATGTTTCAGAAGCTGATTGAAGAGACAGACAG ATTTGTAGTATTCACAGAAGAGGAATCCGGTATGAGTGACCAATTGTGTGGCATTGCTGCCTGCCAGACA GATGACATATACAACCGAAACTGCCTTATTGAGCTGGTTAACTGCCAGATGGTTCTTCGTGGAGCAGAGA CAGAAGGCTGTGTCATTGTATCGGCTGCCAAAGCTCAGTTGCTGCAGTGCCAACACCATCCAGCTTGGTA TGGTGACACACTGAAACAAAAGACTTCCTGGACTTGCCTGTTAGATGGCATGCAGTATTTTGCCACCACT GAAAGCAGCCCTACTGAACAGGATGGCCGACAGCTCTGGTTAGAGGTGAAGAATATTGAGGAGCACCGGG AACGTAGTCTGGACTCTGTTCAGGAGCTGATGGAAAGTGGGCAGGCAGTGGGAGGCATGGTTACCACAAC CACAGACTGGAACCAGCCAGCGGAAGCCCAGCAAGCCCAGCAAGTCCAGAGGATCATTTCACGTTGTAAT TGCCGGATGTACTATATTAGCTACAGCCATGACATTGATCCTGAGCTAGCAACTCAGATTAAGCCACCTG AGGTTCATGAGAACCAGGAAAAGGAGGATCTCTTAAAGAAGCAGGAAGGGGCTGTGGATACTTTTACTCT CATCCACCACGAATTGGAAATTTCTACCAACCCAGCTCAGTATGCTATGATTCTGGACATTGTCAACAAC CTGCTTCTCCACGTAGAACCCAAGCGGAAGGAGCATAGTGAAAAGAAACAGCGCGTGAGGTTCCAGCTGG AGATCTCTAGCAATCCTGAGGAGCAGCGCAGCAGCATACTACACCTGCAGGAGGCTGTGCGGCAGCATGT GGCCCAGATAAGGCACCTAGAGAAGCAGATGTACTCTATCATGAAGTCTTTACAGGATGACAGCAAGAAT GAGAACTTGCTGGACCTGAACCAAAAACTTCAGTTACAGCTGAACCAAGAAAAGGCCAACCTGCAGCTGG AAAGCGAAGAACTGAACATCCTCATCAGATGTTTTAAGGATTTCCAACTGCAGCGAGCCAATAAAATGGA GCTTCGAAAACAACAGGAAGATGTGAGTGTGGTCCGTCGCACCGAGTTTTACTTTGCTCAGGCACGTTGG CGCCTGACAGAAGAAGATGGACAGCTGGGCATCGCTGAGCTGGAGCTACAGAGGTTCCTTTACAGCAAGG TGAATAAATCTGATGACACAGCAGAACATCTCCTGGAGTTGGGCTGGTTCACTATGAACAACCTTCTCCC TAATGCTATTTATAAGGTGGTTCTAAGGCCCCAGAGTTCCTGCCAGTCTGGGAGACAGCTAGCCCTCCGC CTCTTCAGCAAAGTCCGGCCACCTGTTGGTGGTATCTCTGTTAAGGAACACTTTGAGGTAAATGTGGTGC CTCTCACCATCCAGCTGTCCCACCGGTTCTTCCATAGAATGATGGGCTTTTTCTTTCCTGGTCGAAATGT AGAAGATGATGAAGTTGGTGATGAAGAGGATAAGTCCAAACTGGTGACTACTGGAATACCAGTTGTAAAG CCTCGGCAGCTGATAGCAACAGATGATGCAGTACCACTGGGCTCCGGGAAGGGCGTGGCACAGGGCTTGA CCAGGAGTTCTGGAGTCAGAAGATCATTTCGCAAATTACCTGAGCACCCAGTTGATGATATTGACAAGAT GAAAGAGCGAGCTGCCATGAACAACTCCTTCATATATATAAAAATCCCACAAGTTCCACTGTGTGTCAGT CATAAGGGTGAGAAGAACAGTGTGGACTGGGGCGACCTTAACTTGGTGCTACCCTGTCTGGAGTACCACA ACAACACGTGGACATGGCTGGACTTTGCCATGGCTGTCAAAAGGGACAGCCGAAAAGCTCTGGTTGCCCA GGTAATCAAAGAAAAACTAAGGCTGAAACCTGCAACGGGGTCTGAGGTCCGGGGAAAGCTAGAAACAAAG TGTGACCTGAACATGCAACAGCAGGAAGAAGAGAAAGCTCGGCTCCTCATTGGTTTAAGTGTGGGCGACA AGAACCCTGGCAAGAAGTCCATCTTCGGCAGGCGCAAGTGATGTGGAGACCCAAGTGACTACAGTATAGA ATTGACTCTGGCTCAGGATCCAGGGACTTGAGGGTGGGCAGAGCTTCCCTTCATCCTGCAGGATTTGTGG GGCATATGGGAACTGAGAGACATTGTTCAACAGCTGGCCTGTCCCTGCAGGGCATGGTGGACAAAGCGCT GGGTTCCCTCTCATGGGATTAGACCCAGGGCCACAGGGGCAAGAAAACCAGAAGACCCAGGGATTGTGTC CAAGCCTAGTATCCTGCTCTTTCGGGGCAACAGAAAGGGTTGGGGGATAGTTTTGATCAAGTATGATAAA TTTTTATAAAGATATATATATATAAAACATATATATATATTTCTAAATGTAATTGCTCTCCCTTTGTGCC AATAAGCTAAGGGAAGGAGTCTGATCCTCTGTGCCTCACTCCACTGCCTTGTTGTCTAAGAGGTGTTGGG TTTGGGGGATAAACTTCCCAGTCTGTGCTCACTTGGGAGGATGGCATTAGGAGCCAGGGCTGGCCATGGG TACCTTACTTTCCTCCCTGGGGTATGCCCAGGAGAATGGAGAAAAAAGAGATTTAAAGAAAAAATATTTT AAATTTGATGTTGGCCTTTTTTAATTGTATTGAGTAAAAGCGTTCAAGTTGTCAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30537398 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30537398 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12247 same embryo
	EMAGE:12248 same embryo
	EurExpress:euxassay_007134 same experiment
	MGI:4822683 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source