EMAGE mouse gene expression spatial database

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EMAGE:12266

Nrl neural retina leucine zipper gene ( MGI:102567)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007057. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007057_01	euxassay_007057_02	euxassay_007057_03	euxassay_007057_04

euxassay_007057_05	euxassay_007057_06	euxassay_007057_07	euxassay_007057_08	euxassay_007057_09

euxassay_007057_10	euxassay_007057_11	euxassay_007057_12	euxassay_007057_13	euxassay_007057_14

euxassay_007057_15	euxassay_007057_16	euxassay_007057_17	euxassay_007057_18	euxassay_007057_19

euxassay_007057_20	euxassay_007057_21	euxassay_007057_22	euxassay_007057_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12266_wholemount_strong.wlz

12266_wholemount_moderate.wlz

12266_wholemount_weak.wlz

12266_wholemount_possible.wlz

12266_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12266_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T4346
Entity Detected:	Nrl, neural retina leucine zipper gene ( MGI:102567)
Sequence:	sense strand is shown >T4346 GCGAGAGAGGAGAAGAGGGACTGAGACACCGCACGGGGAAAAGGGACGACACCAGCCCCTGCTCTATGGA GTATTTAGTCTCCAGGGAAGCTGTGCCTTTCTGGTTCTGACAGTGACTACGTCATCTCTGCCATTACATC ATCACATAAAGAACACCTCTCTCTGCTCAGTCCCAGAATGGCTTTCCCTCCCAGTCCCTTGGCTATGGAA TATGTTAATGACTTTGATTTGATGAAGTTCGAAATAAAGCGGGAGCCTTCTGAGGGCCGATCTGGAGTCC CCACAGCCTCGTTGGGCTCCACACCATACAGCTCGGTGCCTCCTTCACCCACCTTCAGTGAGCCAGGCAT GGTGGGTGGTGGCGAGGCCCCTAGGCCAGGCCTGGAGGAGCTATATTGGCTGGCCACCCTGCAGCAGCAG CTGGGGTCGGATGAGGTTCTCGGGCTGAGTCCCGACGAAGCTGTGGAGCTGCTGCAGAACCAGGGTCCTG TCTCTATGGAAGGGCCTCTTGGCTACTATTCAGGGAGCCCGGGAGAGACAGGAGCCCAGCATGTCCAGCT GCCCGAGAGATTTTCGGACGCCGCGCTGGTCTCGATGTCTGTGCGCGAGTTGAACCGGCAGCTGCGGGGC TGCGGGCGCGACGAGGCTCTGCGGCTGAAGCAGAGGCGCCGCACGCTCAAGAACCGCGGCTACGCTCAGG CTTGTCGCTCCAAGCGGCTGCAACAGCGGCGCGGGCTGGAGGCAGAGCGCGCTCGCCTGGCCGCCCAGCT GGATGCCCTGCGGGCCGAGGTGGCACGCCTGGCTCGCGAGCGCGACCTCTATAAGGCCCGCTGTGACCGG CTGACCTCCGGCGGCCCTGGGTCCGACGACCACACACACCTCTTCCTCTGAGCCTCTAGGGCAGGGGGTG TGGCGGTTTGGAGGTGGCTGGGTAGATGGCGCTATACAGGAGAGGTAGTACCACTAACCAAATCGCTACC TGTGGTTTTGTGTATGTCTATACAAATATCCCCAAACTTCTGAGCATCGTGGCATGCTAGAGGTTAGATG CTGGTCCTTTGCTGGAGATGAGTTCCCTTCCCTTTTGCAGGTCACGACTCTTCATGATTTAGTAGGGCAC TGAATTCTGTAGGAGCTAGTGCCTGTACTGAGGGTGGAGGTGTGGAGGATGGGCAGGTGGCATGCTGAAT GGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGGAGGAGGAGGAGAAG GAGGGTGCAGCTTCCCTCCTATCCATATAGTTCTTAATTCAAGGTTTTCAATCTGTAGTGCATTAATGCT GTAATTAACAATGAAGCTGCATTTTCACCGAATCTTTGGACTCTCCATTTTACGACTACTGGACTGTCAG GATTTCAATTTCCCTAAACAAACAGTAATAGGTCAACTCAAAATGTTCTTCTCTGCTCAACCCAGTGGCC TTTAGAGTCCAAAGCAGCAGAACAAGTGCCCTGGATGGGAGCCTGACGACCTGGGCAGTAGTCTCAACTG TGTCACACAGGCTGTATGTCTGTCACCTTAAGCAAAGCAATTGTCACAAGGTTTCTCTCATTTGAACTGG ATGACTTCCGACACTGTTTTAGTTTTGGCAGGTCTAATGGTCTCCTCAAGAGGGCCCAAGAGGACTGTAC CAAAGGGACATCCTGTTCTGTCTCATCTTCCAGGCTGTAGCTTAGGCAATAGATACACAGCATGCCTGCT CTGGGGACGCTCACTTGTACTGCCTAAGTGGCCCCCTCTAGGCTTCGCTGGCCTCCAAACTGCAGAAGGT GCCCTTGCTACCTCCTGCCTCTCAGAGCTGAAGTGAGACCTCACAGGATAACAGGGAGCCGAGAGACTGT GACTTTTTGTGAATTAAACCTCAAGTTCAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:4527590 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4527590 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12268 same embryo
	EMAGE:12267 same embryo
	EMAGE:12269 same embryo
	EMAGE:12271 same embryo
	EMAGE:12270 same embryo
	EurExpress:euxassay_007057 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source