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EMAGE:12351

Rai2 retinoic acid induced 2 ( MGI:1344378)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12351 EMAGE:12351 EMAGE:12351 EMAGE:12351 EMAGE:12351
"Pseudo-wholemount" of euxassay_008271. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_008271_01 euxassay_008271_02 euxassay_008271_03 euxassay_008271_04
EMAGE:12351 EMAGE:12351 EMAGE:12351 EMAGE:12351 EMAGE:12351
euxassay_008271_05 euxassay_008271_06 euxassay_008271_07 euxassay_008271_08 euxassay_008271_09
EMAGE:12351 EMAGE:12351 EMAGE:12351 EMAGE:12351 EMAGE:12351
euxassay_008271_10 euxassay_008271_11 euxassay_008271_12 euxassay_008271_13 euxassay_008271_14
EMAGE:12351 EMAGE:12351 EMAGE:12351 EMAGE:12351 EMAGE:12351
euxassay_008271_15 euxassay_008271_16 euxassay_008271_17 euxassay_008271_18 euxassay_008271_19
EMAGE:12351 EMAGE:12351 EMAGE:12351 EMAGE:12351 EMAGE:12351
euxassay_008271_20 euxassay_008271_21 euxassay_008271_22 euxassay_008271_23 euxassay_008271_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12351Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12351_wholemount_strong.wlz
12351_wholemount_moderate.wlz
12351_wholemount_weak.wlz
12351_wholemount_possible.wlz
12351_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12351_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T9922
Entity Detected:Rai2, retinoic acid induced 2 ( MGI:1344378)
Sequence:sense strand is shown

>T9922
GGGCATAGAGGGCGGCACGCAGTGCACTCCGTGCCCGGGCACCGCACCGGGCTTGTCTCGGTATCTGCCA
TTCTGCCCCAGCCTGGAAAACCAGGCGCCTTCCAGGCCTTTCGAAAGATGGATTCTGTTGACGTATCTGG
CGGCCCTGGCGAGAGGGGTGGAAAGTTGGGTTTTGCCAGATCGTGCTGGGATCTTCTTTGTGCCGCTGAG
CAAGTCCCGCATCCCGCTGGAGCAGGGCCACGTGGCACCGGAGCCAAGTGATGGATGACCTGCAGTCCCA
GAATCTTTCCATGGACATGACTGACTCCCCTCCCACTTTGGCTAATAACAGACTGGAGAACCGCATGGCC
CAGCTGATAACTACCGAGGCCTGGAACATCAACTCCACTGACCTGGTAAAGAAGGCCCTGGTGACCGTTC
CGGCCCCATCAATTCTGAACCCCCCAGCTGAGTCCCAGAGTGGCATGGCTCTGAAGGTAGCAGCCACCGT
GCTGCAGCCCCTGTGCCTTGGGGAAAGCCCAGTGGTGATGCCCATTCACATGCAGGTGGAGGGAAGCTCT
GCGCCAGAGCTCAACCCCAATGGCAACGCTACCTACGTTATGACGACACAAGGCCCCGTGCAGCTACCAG
TGGTGTTGGAACAGCATGTTTTCCAGCACCTCAACTCCCCTCTAGTCCTGCCACAGGAGGCCCCGTGCTC
CTCCAATGCTATCCACAACAACCTCTTCCAGGGGGCTGAGGACTCTGAGGCCCAGCCTCAGCTCCTGGAC
CTGAGGATCCCAAGTCAGCCACAGGAGCCCGCATTGCCTTTTGAAGCTGTGCTCCAGAATTTATTCCCCA
CCCAAGGCTCTCTGGGCCCTCCACCCTGCCAGCCTCCTCCTGGCTATGCTCCAGTGCCTCCCCAGCCCTT
TAACTCCCCCTTGTCCCCCCTAGTCCCGCCAGCTACCCTCTTGGTGCCCTATCCTGTGATTGTCCCCTTG
CCAGTTCCAGTGCCCATCCCCATCCCTGTCCCAGTGCCTCAGAGTACTGAATCCAAGTTCAGCCCCACTT
TCCCCAAGCCGCCATCTTCCTTCGGCTTGCACTCCTTTAAAGGCACCCAGACCACTCTGGAAAAGGACGA
ACTGAAGCCCTTAGACATCCTCCAGTCAAAGGAGTATTTCCAGCTCAGCCGCCACACAGTCATCAAGATG
GGGAGTGAGAATGAGGCCCTGGATCTGTCCATGAAGTCAGTGCCCTGGCTCAAGGCTGGGGAAGCTAGCC
CCCCAGTCTTTCAAGAGGATGCAGCCCTAGATCTGTCTTTGGCAGCCCACCGAAAAGCTGAGGCTCCTCC
AGAGACATTGTATAACAACAGTGGGTCAGCAGACATCCAGGGTCACACCATACTGGAGAAACTTTCCAGT
GGCATGGAAATGCCCTTTGCCCCTGCCAAGTGTTCTGAAGCCTCAGCCATGATGGAGAGCCACAGCAGCA
ACAGCAACGGCACTGAGATGGTCAGTCAGCCCAGCCATCCTGGCAGTGAGCTGAAGGCTGAAAATAACAT
TGAGATCTTAAGTGAGTCTCAGGCGGCCAAGGTCATTGTGTCAGTTGAAGACGCCGTGCCTGCCATCTTC
TGTGGCAAGATTAAAGGCCTCTCAGGGGTATCCACCAAAAACTTCTCCTTCAAAAGAGAAGACTCTGTGC
TTCAGGGTTATGATATCAACAGCCAAGGAGAAGAGTCCCTGGGAAACGCCGAGCCCCTTAGGAAACCCAT
CAAAAACCGGAGCGTAAAGTTAAAGAAAGTGAACTCCCAGGAAATACACATGCTTCCAATTAAAAAACAA
CGGCTGGCCACCTTTTTCCCAAGAAAGTAAATAAGAGCTTTAAAACGTTTTTATGATTAAGACGTGGGGA
AAGGTGCATTGTTTTTTTTTTTTTTTTAAAGGCACTAAGACAAATTATCTTTGTTAATTATTTTGGGGTA
TAGGTGGGAGCAGAAAGGCAAATTAGCTAGTATCATTTTCTTTTTTAATTTTTGACTTTTCACAAATGAG
TAAATAAGAGCAACCTATTTTTCAAGCAGATTGCACATTTTTTTGCAGCTTTAATGGAATATTGGGTGAA
TCAGAGGGGTAAGAGCTATTTTCATTGCCACAAAGTGCTTTGATGATGTAATACCTAATAAAGGGTAGGA
TGAATATTTCACAATAAATGTTTGTTTGCACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30300326 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30300326 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12350 same embryo
 EMAGE:12349 same embryo
 EurExpress:euxassay_008271 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS