EMAGE mouse gene expression spatial database

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EMAGE:12360

Bahcc1 BAH domain and coiled-coil containing 1 ( MGI:2679272)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_008423. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_008423_01	euxassay_008423_02	euxassay_008423_03	euxassay_008423_04

euxassay_008423_05	euxassay_008423_06	euxassay_008423_07	euxassay_008423_08	euxassay_008423_09

euxassay_008423_10	euxassay_008423_11	euxassay_008423_12	euxassay_008423_13	euxassay_008423_14

euxassay_008423_15	euxassay_008423_16	euxassay_008423_17	euxassay_008423_18	euxassay_008423_19

euxassay_008423_20	euxassay_008423_21	euxassay_008423_22	euxassay_008423_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12360_wholemount_strong.wlz

12360_wholemount_moderate.wlz

12360_wholemount_weak.wlz

12360_wholemount_possible.wlz

12360_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12360_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9201
Entity Detected:	Bahcc1, BAH domain and coiled-coil containing 1 ( MGI:2679272)
Sequence:	sense strand is shown >T9201 TGGACAGCCCAGTCACTTCACTGCAGGCCCCAGCTGCTGACCCAGACAGAGGCCCCAGGCTCACCCCCAG AATGCAAATCCTGCAACGCAAGGACACCTGGGCCCCTAAAACAAAGCCTGTATGTCCCCTGAAGGCTGCC ATCGACCGGCTGGACACACAGGAAGTGGAGATGCGCATGCAGCTAGCAGAGCTGCAGAGGCGCTACAAGG AGAAGCAACGGGAGCTGGCTCGCCTGCAGCGCAGGCATGACCACGAGAGAGAGGAGAGCTCACGGAGCCC TGCACGGCGGGGGCCTGGCAGGCCAAGAAAGCGCAAACACTCAAGCTCACTGCCTGCCCTGCGTCCCGGG GGCCAGCTTGCCAGAAGTGACAGCAAGAAAGCCAAGGCTGTTCGTGCAAGCCTAAGTCTGCTGTGTGCTG AGCTACGAGGTGATGAGCCCCCAAGGAAGCGAAGCAAACTGGGAAAGAGTCCTTACACTGGCCTGCAGTC CGTCTCCTCGGAGAAGGTGCGGTGCAAGAAGAGCTGTGGCCAGGCCGAGTTGCCATCCTCGGTGGCCCAC AAGGTGGCCCAGCTGAAGCCAAAGGTCAAGAGCAAGGGGCTGCCTGCCGGCCTCGGTGCCTTCCAGCGCA AAGAGGCTGCCCCAGGTGGGCGCATCCAGAAGAAGCTATCTAGAGCCAAGAGCGTCACGGCGTCAGGGGC GGCACGGCATCCACACCCCGATGGGGACAGTGGCAGGGAGATGCACAAATTCCAAGCCCAACCCGCAGTG GCTGTGGCACATGAGGCAGGCAGCGGCTATGACAGTGAGGACTGCCAGGCACTCCTGGGGACAGAGGCAG CTCCCAGAGAGCCTGGGCTGGTGTTGCACCCAGGGTCTGGTGTGGCAGTGCTGGGACCCTCACCTTCCTC CGTGGTCAAGATGGAAGCCAATCAGAAGGCCAAGAAGAAAAAGGAGAGGCAGGGCTTGCTAGGGGCCTGC CGCCTGTCCAGCCCCGAGGGCGAGGTTAAGATCAAGAGACGAACAGTAAAGACCAAGGTGGGAGCCAAGC TGGAGCGGGCGCCAGGGCGGCGGCCCCCGGGTGCACCAGGCAAGAAGAAGGCCAAGGGCAAGGTGAAAAC TGGCCTGCGTACAGAGCCAGGAACCGCCACCAGCAGAGACACCCTTTTCAGTCCCACCCGGACTTTTGCC TGCCGAGAGGAGGGCAGCAAACTTGCCAGTGAGCGCCTCAAGAGAGCCACCCGCAAGAGCGCCATGTTGC AGCCAGTCCTGAGGCGGAAGAATGGGGCCTTGTCCATCGCTCTGTCAGCCCGCAACGCCAAGGCCATCCT GGGAAAGAGCAGGAAGCTGACGAAGGTGAAGAGAGAGGCTGTCAGCAAGCAGGGCCAGGGGCGGGCGGTG AGCCGGCTGCTGGAGAGCTTTGCTGTGGAGGATGACTTTGAGTTTGACGAGGATGACACCAGCTTCTCGG ATGAGGAAGAAGAAGAGGAAGAAGCCGGTGTACAGCTCAGCGCAGAGCAGAGCGCCGCCCTGGCACGGTC CTGCACCATCCACAAGGAAGACCTGCAGGACGGACTGCCCGTCCTGATCCCGAAGGAGGACAGCCTGCTG TATGCGGGCAGTGTCAGGACCCTGCAACCCCCCGACATCTACAGCATCGTCATTGAGGGGGAGAGAGGCA ACCGTCAACGTATCTACTCGCTGGAACAGCTGCTGCAGGAGGCGGTTCTTGATGTCCAGCCACAGTCCAG TCGGTACCTTCCACCTGGTACCCGGGTCTGTGCCTACTGGAGTCAGAAGTCCCGGTGTCTATATCCAGGC AATGTGGTTCGAGGTGCTTCAAGCGATGAAGAAGACCTGGACTCAGTGTTGGTAGAGTTCGATGACGGAG ACACAGGCCACATAGCTGTCTCTAACATCAGGCTGCTGCCTCCGGACTTCAAGATCCAGTGTACAGAGCC CTCGCCAGCCCTGTTGGTGTCCAGCAGCTGCCGGAGGACCAAAAAAGCAGCCAATGAGGGCCACCCGCCC AGCGAAGCCCCCACACCCAGCCTGTCCCCTAAAGTGCCGGATGGCCCTGAAACTTCTAAGACCCCTGGGA AGAAATCTGGCAGCAAAGACAAAGCTGGCAAAGTCGACCTCCTAACCTCAGGTGCCAAGTCCCCCACGGG GGCCTCAGACCACTTCCTAGGCCGCAGAGGCAGCCCCCTGCTGAGCTGGTCAGCAGTGGCTCAGACCAAG CGGAAAGCGGTGGCTGCGGCAGCGGCGGCGGCAGGTGGCAAAGGGCCGGGGGTACTACAGAACCTCTTCC AGCTCAACGGAAGCACCAAGAAGCTGCGGGCCCGGGACACCCTGTTTCCCATGCATAGCATGGCTACCCC CGTGTTTGGTAACAGCTTCCGAGCTGACTCCTTCAGCAGCCTGGCGAGTTCCTACACACCCTTCCTTGGA GGGGCTGGGGCAGGCCTTCCCGGAGGAGCCCACAAGCTGCTTAGGGCCAAGAAGGCTGAACGGGCTGAAG CAGAAAAGGCCGGGAGGCGGCGGGCAGGCGGCGAGTTTCTGGTTAAGCTGGACCATGAGGGTGTGACCTC CCCCAAAAACAAAAACTGCAAGGCCCTGCTCATGAGCGACAAGGACTTCGGACCCAAGCTGGGGCGACCT CTTAGCAACCCCAGTTACGCACACCCAGCCCTCATTGGCAAGGACAAGAAGGGTCGGGCGCCTGTGCATC CGCTACCCATGGGGCTGGCTCTGCGCAAGTACCCACTGCCCTGTGATAGTGACTGCCCCAGCTCCTACTC CGATGAGGACGAGGATGGGCCGGGGCTGGCCACCGGTGTTCCCTCCCGATTCCTCACCCGCCTATCCATG TCGTCGTCCTCCTCTGGCTCGTCCACGTCTTCTTCCTCAGGCTCCGTGTCCACGTCCAGCCTCTGTTCCT CAGACAATGAGGACTCATCTTATAGCTCAGATGACGAGGACCCTGCCCTGCTGCTGCAGACCTGTCTCAC CCGCCCTGTGCCCGCCCTCCTGGCCCCACCCGAAGCCCTGCGCTCTAAGGGTAGCAGCCCCCACGCGCAC ACCCACGCCCAGCGCTGCTTCCTGTCCAGGGCTGGGGTGGCTGGTGCAGGTGCAGGGGCCAGCCCCAGTG GTAGCAAATCCAAGTTCAAGCGCAAGGAGGCCCTGAGCTTCTCCAAAGCCAAAGAGCTTTCTCGGAGGCA ACGGCTGCCCTCCGTAGAAAACCGGCCAAAGATCTCAGCCTTCCTGCCTGCCCGGCAGCTCTGGAAGTGG TCAGGAAACCCCACGCAGAGACGAGGCATGAAGGGGAAAGCCAGGAAACTATTCTACAAGGCCATTGTCC GAGGCAAGGAGACACTGCGCATCGGGGACTGTGCGGTCTTCCTTTCGGCCGGCCGGCCCAACCTGCCCTA CATAGGCCGCATCGAGAGCTTGTGGGAGTCCTGGGGCAGCAACATGGTGGTGAAGGTCAAATGGTTCTAC CACCCAGAGGAGACCAAGCTGGGGAAGCGGCAGAGTGACGGGAAGAACGCACTGTACCAGTCCTGCCACG AAGATGAGAATGACGTGCAGACCATCTCCCACAAATGTCAGGTGGTGGGCCGAGAGCAGTATGAACAGAT GATGCGGGGCCGCAAGTACCAGGACCAGCAGGACCTGTACTACTTGGCAGGCACCTATGATCCTACTACT GGGCGCCTGGTGACAGCTGACGGCGTGCCCGTCCTGTGCTGAGCTGCTTCTGCCTCTGCCCACCCTCGCC CATGACTGCAGCCAAGAGGTCAGCCAGCCAGGAGCTGGTCTGAGCAAATATGCAACCCCCCCAAGGCGGG ATCAGGCTTCTCTTCGAAGTTCTCTGGAGAGAGCTCCTAGGATAGACCCCCCGAGTCCCATCCTAGCTGC TCCAGGGGGAGAGCCAGGCTGGTCCCACGGGGACCGGCTGCTCTGCCGCTGCACCGCAGTTCTCGAGAGA TTAGAATCCAAGCCATATTTCCCTAGTACCTCCGACTGTCTCCCACCAGGGAAAGCAGAAATCAGGTGTG TTGTCTATTTATTTCTCTATGTAAATATTGTATTTCTGTGGGGAAGTTTTATGGGGGAAAAAGTGGAAAA GAATTTTCCCCACCTTTGCGACAAGGGTGGATGCGCGACGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGCGTGCGCGTATGCGTGTGTGCGTGTAGGGGTTTTTGTCCTGGGGTTTTCTTTGGAAGTGCACTG TTCTCAGCCTAGTTGAATTCCAACAGGGGCATCTGTGACTGCAGAGGCTGCTGGAATGGGGGCGTGGCCA AAGGCCGTGGGATGGTCACATGAGACCCAGTCATACCCTCCAATCTCTTGGGGGCCAACTGTGAAGGAAA TTACACTGCGGTTTATTTCCTTTCAATACATCCCATCCATGAAAGTATTTGGGTGGGGGCAGTGATGGCG GTCCCCTGGAACGACCAGGGGTTCCAACCACAGGATGAGAACCAGGATCAGCCTGCGGGCCGGTACCGGC CTGCCCCACTCTACAGCCCAGGAGTATGGCAACAGCCACGTATCTCTTACCTCTGTTTAAAACAAAACAA ATGAACAAATATTTTGAAATATCAATAAGAAAAATGGATGTTTAGACTTTCTTTCCTGAATATTCCAAGT TATTTCTGGTTTCCGTTTCCATGGCCAGTTTGATGCAGGGAGAGAAGCCTGGCCTTGCTCGAGCAGGGTG CAGGCGGCCCCCGGCCCCCTCCGTCCCCACCAGCTCTCGGCCCCTTCCTTATCCTCCAGGGCAACAGCTG CCTTCCCCCAAGAGCTGCAGGGCTTCCAATGGTGCAGCTGGTCCAGCTCCCTGTCTGGGCCAGAATTTGG GGCCCGTCTGGGGCTGGTCCACAGTTCTGCATGAGAACATTCTCACCACTAAGATGCACCCCCTTTCCCC ACCAGATACTTTCCCTGGGGTCCCACCACCTCTGGATAGCCTCAAGTGTGGATAGCCATGAGGCTGAGCC AGAGGTTCTGGAGTCACAACAGTAGAAAGGCGATGCTGCTCACCCAAGGGGGCGCCCATCCGGCTCCCCT TCTCTCAACCTAGACCCTGATCCTGGGCCCCCTCTGCCCACCCCACACCTACACAGTTTCTGGACCTTTT TTATATCCACTCAGCAGGGCAGATAGCATGGCAGGCTCATGCACAGAGTATATACAACAAGGGTCCCTTC TGGCCTCTTGTACACACATCCTGACCCCAAGTACCAGGAAAGCCAGGCAGTCCTCACTTCTCCCATGATG GAAAGAGCAGGCTAGACCCATGGACCAAAAGCCTTTGTTCTCAGAAATGCCTTGTGGCACCCGTGCTCCC CAGTGTCCACTCGGCCAAGGCTTCCTAGGAAGTGGGGAGTACTGGAGGTCACCCAGCCCTAACTGGGAAC CCCCGGCCTCTCTTCCTTTGCTCAGGCCCGCCAAGAGTCTATCCTGATCCCAGGGACTCTGTTTTTCTTA CTAGTTGCTCCAAGGGTCCCTCTTGGTGGTCCACAGGAACACCAAGGGTGCCCGTTCCTGGCTGTCCCAC CACCCTGAGGGTTTCTGTTCTCCACATGAGTGCAATATTCCATCCTTGGTGGTCATCAGAAGAGATGACC ACCAGGGTCCTGCTCACAGCCAGGGAATCAGGAAGATGGTGACTTAAGAATCAAGACCAGGGCTGTCACT AGAAAGGCTGCCCGGAACCCCAGTACCCAGGAGCCCCGGAGCAAGTAGAAAGGCTGTTGTCCTGTGTGCT ACCTTCTCCGCGTTTCTTCTGCCCTCTGCTGAACTGTCCTCTTGCTCTGTCTTTATCTTTAGGTCCCCCC ATCCTTTTCCTTTCTTTCTGTGTGTACACGCAAATGGCGTGACTCCTCCTCCCCAACTGTGGCTAACGTG GTAAAAAGCACGAATCTTGTAAATGTGTAAACTAAGAGGCTGGTTGGTTGGTTTGTTGTTTTTTTTTTTC AATGTAAACACTAAATACAAAAACAAAAAAACAAAGGTTTTATGAACAGCAGACTCTATGTAAAGGCATT TTACTATTAAATTTTTTATTGATAACTTGCTTAAGAATAAATATATGACTATTGTACAGGTAAAAAAAAA AAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6830770 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6830770 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12357 same embryo
	EMAGE:12355 same embryo
	EMAGE:12356 same embryo
	EMAGE:12359 same embryo
	EMAGE:12358 same embryo
	EurExpress:euxassay_008423 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source