Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:12386

Nhej1 nonhomologous end-joining factor 1 ( MGI:1922820)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12386 EMAGE:12386 EMAGE:12386 EMAGE:12386 EMAGE:12386
"Pseudo-wholemount" of euxassay_007098. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007098_01 euxassay_007098_02 euxassay_007098_03 euxassay_007098_04
EMAGE:12386 EMAGE:12386 EMAGE:12386 EMAGE:12386 EMAGE:12386
euxassay_007098_05 euxassay_007098_06 euxassay_007098_07 euxassay_007098_08 euxassay_007098_09
EMAGE:12386 EMAGE:12386 EMAGE:12386 EMAGE:12386 EMAGE:12386
euxassay_007098_10 euxassay_007098_11 euxassay_007098_12 euxassay_007098_13 euxassay_007098_14
EMAGE:12386 EMAGE:12386 EMAGE:12386 EMAGE:12386 EMAGE:12386
euxassay_007098_15 euxassay_007098_16 euxassay_007098_17 euxassay_007098_18 euxassay_007098_19
EMAGE:12386 EMAGE:12386
euxassay_007098_20 euxassay_007098_21

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12386Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12386_wholemount_strong.wlz
12386_wholemount_moderate.wlz
12386_wholemount_weak.wlz
12386_wholemount_possible.wlz
12386_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12386_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6549
Entity Detected:Nhej1, nonhomologous end-joining factor 1 ( MGI:1922820)
Sequence:sense strand is shown

>T6549
CTCTCAGTTTGCGCACCAGGACAGGCCCGCCTTGAGGAGGGTGGGAGTTCCCGCAGCCGTTGACGTTGAC
ATGGAGGTGTGAGCCGCCCTCTTGAAGGCTGACTTTCCTGAGGACACTGTGCTGAATTAGGACTTTTCTG
CAGATGGAAGAGCTAGAGCAAGACCTGTTGCTGCAGCCATGGGCATGGTTACAACTTGCGGAGAACTCAC
TCTTAGCCAAGGTGTCTATCACCAAGCACGGTTATGCCTTGCTGATTTCGGATCTTCAACAGGTGTGGCA
TGAACAGGTGGACACTTCGGTGGTCAGCCAGCGAGCCAAGGAGCTGAACAAGCGCCTCACTGCGCCTCCT
GCAGCTTTGCTCTGTCACCTGGATGAAGCACTTCGCCCACTGTTTAAAGATTCTGCTCACCCTAGCAAAG
CTACTTTCTCCTGTGACCGAGGAGAGGAGGGACTGATCCTGCGGGTGCAGAGTGAGCTCTCGGGTCTTCC
CTTCAGTTGGCATTTCCACTGTATTCCAGCTAGTTCTTCACTGGTCTCTCAGCATTTGATTCATCCTCTG
ATGGGTGTGAGCCTGGCACTGCAGAGTCATGTGAGGGAGCTAGCAGCATTGCTTCGGATGAAGGACCTTG
AGATCCAGGCCTACCAGGAGAGTGGGGCTGTGCTGAGCCGAAGTCGATTGAAGACAGAGCCATTTGAAGA
AAATTCTTTCTTGGAACAGTTTATGGCAGAGAAATTGCCAGAGGCGTGTGCTGTTGGTGATGGAAAGCCA
TTTGCCATGAGTCTGCAGAGTCTGTATGTGGCAGTTACAAAACAGCAGATCCAAGCAAGGCAGGCACATA
AAGACTCTGGAGAGACTCAGGCATCAAGCAGCACCTCCCCTCGAGGAACTGATAACCAGCCAGAAGAGCC
GGTCTCCCTCCCTTCCACCCTCTCAGAACCTGAATATGAGCCTGTGGCTGCTTCAGGCCCTATGCATAGA
GCTCAGCTGGTGAAGTCCAAGAGGAAGAAGCCCAGGGGACTCTTCAGTTAACTCTCCATGTCTCAGCCAC
CACGAAGAGAGCAAAACCACTTCCTAGCATCACCTGGAAGGAGCTTGCATGGCAGAGCATCCCTCAGAGG
CCTGAGTTTGTGTTGACAGGCCACCTGGATGGGGACTTTACCAGAGGAAGCCTGACTCCAACTCACTGGC
ATTCCGGATATGAGTGACACCAGCTCCTTGCTTGGGTAGTGTTCTTTCTTTAGAACTAGCACCCTATGGC
AAACTTAGGTACATGAAGCAAGTTTACAAAGAGGCGCATGCCCAGAACTCCTGGCTGCCTTTCACAGGGG
TCTCTCTCTCTCAACACAGAATAAAGGATGCTCACACTCCTCGACTGTTGAGGTTACCTGTGATCTCTGG
ATCCCAGAATCCCCCTAGAACAGAACTGGGTGTCCCCTAGTCCTGTTGGGTCACATCTGAGCTATCAGCT
CCATCCTACAGACTCTTCGTCAGCTTCTCTCATGAGGCTGAGGTCAGCCACAGTTAGAAGCCTTGATCTT
GAGAACTCTCTCCATGTTGGTACAAGACAGATTACATTTCTGTCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3591824 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3591824 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12384 same embryo
 EMAGE:12382 same embryo
 EMAGE:12381 same embryo
 EMAGE:12383 same embryo
 EMAGE:12385 same embryo
 EurExpress:euxassay_007098 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS