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EMAGE:12685

2210018M11Rik RIKEN cDNA 2210018M11 gene ( MGI:1924203)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12685 EMAGE:12685 EMAGE:12685 EMAGE:12685 EMAGE:12685
"Pseudo-wholemount" of euxassay_013632. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_013632_01 euxassay_013632_02 euxassay_013632_03 euxassay_013632_04
EMAGE:12685 EMAGE:12685 EMAGE:12685 EMAGE:12685 EMAGE:12685
euxassay_013632_05 euxassay_013632_06 euxassay_013632_07 euxassay_013632_08 euxassay_013632_09
EMAGE:12685 EMAGE:12685 EMAGE:12685 EMAGE:12685 EMAGE:12685
euxassay_013632_10 euxassay_013632_11 euxassay_013632_12 euxassay_013632_13 euxassay_013632_14
EMAGE:12685 EMAGE:12685 EMAGE:12685 EMAGE:12685 EMAGE:12685
euxassay_013632_15 euxassay_013632_16 euxassay_013632_17 euxassay_013632_18 euxassay_013632_19
EMAGE:12685 EMAGE:12685 EMAGE:12685 EMAGE:12685
euxassay_013632_20 euxassay_013632_21 euxassay_013632_22 euxassay_013632_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12685Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12685_wholemount_strong.wlz
12685_wholemount_moderate.wlz
12685_wholemount_weak.wlz
12685_wholemount_possible.wlz
12685_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12685_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T31699
Entity Detected:2210018M11Rik, RIKEN cDNA 2210018M11 gene ( MGI:1924203)
Sequence:sense strand is shown

>T31699
CAGCAGCCTCAGCAGTCAGCATTGCCGCCTGGTATCAAACCTACCATCCAGATCAAACAGGAGTCAGGTG
TTAAAATCATCACACAGCAGGTTCAACCAAGTAAAATCTTACCCAAACCAGTGACTGCAACTCTACCCAC
CAGTAGCAATTCCCCAATTATGGTGGTTAGCAGTAATGGTGCAATTATGACAACTAAACTGGTAACCACT
CCTACCGGTACTCAGGCAACCTATACCCGGCCAACAGTGAGCCCATCCTTAGGTCGTGTGGCTACAACCC
CTGGAGCTGCAACCTATGTGAAAACTACCAGTGGCAGCATCATCACTGTAGTACCCAAATCATTAGCTAC
CTTGGGAGGCAAGATAATTAGCAGTAATATTGTTTCTGGAACGACTACCAAAATCACTACAATCCCAATG
ACTTCCAAGCCCAATGTGATTGTTGTACAAAAGACTACAGGAAAAGGAACGACCATTCAAGGCCTCCCTG
GCAAAAACGTTGTCACAACCTTGCTAATGCTGGAGGAGAAAAGACTCTTCAGACAGTGCCAGCTGGAGCC
AAGCCAGCTATAATTACTGCTACAAGACCCATCACCAAAATGATTGTAACACAGCCCAAAGGAATAGGTT
CCGCAGTACAGCCAGCAGCTAAAATCATTCCAACAAAAATTGTGTATGGACAACAAGGGAAAACACAGGT
TCTAATTAAACCCAAACCAGTGACATTTCAAGCTACAGTTGTCAGTGAACAAACAAGGCAGCTGGTAACA
GAAACATTACAGCAAGCATCCAGGGTAGCAGATGCCAGTAATTCATCTGCTCAGGAAGGAAAAGAGGAGC
CACAGGGTTACACAGACAGTAGTTCTTCTTCCACAGAGTCCTCCCAGAGTTCTCAAGATTCCCAGCCTGT
AGTTCATGTAATTGCTTCCCGGCGTCAGGATTGGTCA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4236610), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 33819. Forward Primer - name:033819_F_IRAV81-84_N02_2210018M11Rik, sequence:CAGCAGCCTCAGCAGTCA; Reverse Primer - name:033819_R_SP6_IRAV81-84_N02_2210018M11Rik, sequence:CTGACCAATCCTGACGCC. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12686 same embryo
 EMAGE:12687 same embryo
 EMAGE:12684 same embryo
 EMAGE:12683 same embryo
 EurExpress:euxassay_013632 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS