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EMAGE:12807

5330431K02Rik RIKEN cDNA 5330431K02 gene ( MGI:1915439)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12807 EMAGE:12807 EMAGE:12807 EMAGE:12807 EMAGE:12807
"Pseudo-wholemount" of euxassay_017686. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017686_01 euxassay_017686_02 euxassay_017686_03 euxassay_017686_04
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euxassay_017686_05 euxassay_017686_06 euxassay_017686_07 euxassay_017686_08 euxassay_017686_09
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euxassay_017686_10 euxassay_017686_11 euxassay_017686_12 euxassay_017686_13 euxassay_017686_14
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euxassay_017686_15 euxassay_017686_16 euxassay_017686_17 euxassay_017686_18 euxassay_017686_19
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euxassay_017686_20 euxassay_017686_21 euxassay_017686_22 euxassay_017686_23 euxassay_017686_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12807Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12807_wholemount_strong.wlz
12807_wholemount_moderate.wlz
12807_wholemount_weak.wlz
12807_wholemount_possible.wlz
12807_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12807_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T40187
Entity Detected:5330431K02Rik, RIKEN cDNA 5330431K02 gene ( MGI:1915439)
Sequence:sense strand is shown

>T40187
CAAAATGAAGACAGTGCGAGAGTAGAGCCAAGGCAGAGGTTAGACCATCTGCAACATGGCCTACCACGCT
GGACACAAGGATGGTGATGTAGGGTGATAGCCTTGGCTGTCTCCCTTACTGCCATGACCCAGTCCCTCCA
AACCTCATCCGCTCCATCCACCACTGCTTCCCTTCTCTCTTCAACCACAAGTGACAGTAGTGTCTGCCAA
TTTTCAGAGACTCACATTTCCTGTGGTTTACTGCCTTAGTCAGCTGAATTAGTAGTACAACTCTAGCGTA
TTTACATTAGTTCTCTCGCCACTAGCTACTAGATCACGTTCACGGAAGCCTTCTTCTGTCTGTGATTGAA
TCTGAAAGGTGTACATGGGCGGTTCTGCTTGAGAACCTGTGCCTTCCCCGTAGAGGATGAAAGATGAGCA
AACCGCAGGCAAGCATCTTTAGGTCTGTGCTGAGAGACTGCTAAAAATATCCTTTCCGGAGATTGGCTCA
GGTTAGAGAGTTGACACCGATATTTTACGTTTCAGTCAGGCGAGTCTTTCCCTTCCTTTCACGTTAGTGA
GTTAAGGTCTCCTGTCTAACATTTGCCTGCAGAGCTGTAAGAGAAAGAAAGAAAGAAAGAAAAAAAAAAA
AAAACCTCAACCATAACCCTAGGCTTTGTCATATTTCTGTGTCTATTCCTGGACAGCTAGCCATCGCGTA
GATTATGACTTAGTTGTGTATGCCTAGAGTGAATCCACTGCTCTACAATGGAGAGTCATGGATGCAGTTT
TCAGCCTTGCTCTCAGCCTTTCTTTAAGCAACAAAGCACATACACGCATCGTCCCTTT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 65100. Forward Primer - name:065100_F_cDNA_5330431K02Rik, sequence:CAAAATGAAGACAGTGCGAGAG; Reverse Primer - name:065100_N_SP6_cDNA_5330431K02Rik, sequence:AAAGGGACGATGCGTGTATGT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_017686 same experiment
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS