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EMAGE:13232

Cdx1 caudal type homeobox 1 ( MGI:88360)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13232 EMAGE:13232 EMAGE:13232 EMAGE:13232 EMAGE:13232
"Pseudo-wholemount" of euxassay_017696. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017696_01 euxassay_017696_02 euxassay_017696_03 euxassay_017696_04
EMAGE:13232 EMAGE:13232 EMAGE:13232 EMAGE:13232 EMAGE:13232
euxassay_017696_05 euxassay_017696_06 euxassay_017696_07 euxassay_017696_08 euxassay_017696_09
EMAGE:13232 EMAGE:13232 EMAGE:13232 EMAGE:13232 EMAGE:13232
euxassay_017696_10 euxassay_017696_11 euxassay_017696_12 euxassay_017696_13 euxassay_017696_14
EMAGE:13232 EMAGE:13232 EMAGE:13232 EMAGE:13232 EMAGE:13232
euxassay_017696_15 euxassay_017696_16 euxassay_017696_17 euxassay_017696_18 euxassay_017696_19
EMAGE:13232 EMAGE:13232 EMAGE:13232 EMAGE:13232 EMAGE:13232
euxassay_017696_20 euxassay_017696_21 euxassay_017696_22 euxassay_017696_23 euxassay_017696_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13232Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13232_wholemount_strong.wlz
13232_wholemount_moderate.wlz
13232_wholemount_weak.wlz
13232_wholemount_possible.wlz
13232_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13232_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30158
Entity Detected:Cdx1, caudal type homeobox 1 ( MGI:88360)
Sequence:sense strand is shown

>T30158
GAAACAGCAGCAGCAGCAGCCCCTGCCTCCCACACAGCTGCCCCTGCCCCTGGATGGCACTCCCACACCA
TCAGGGCCACCCCTAGGAAGTCTATGCCCTACTAATGCTGGCCTTCTGGGCACCCCCTCCCCAGTGCCCG
TCAAGGAGGAGTTTCTACCCTAGCCCCTTGCAGCCTGGGGTCTAGGGATCTAGGGACTTGAATGCTGGGC
AGCTGGCTTTTCTGGGGCCCAAGGACCTGTTCTGAGTTGCAGCCCTGCTGCTGCCCTTTGGGGTCACTGT
GGACAAACTGCCTACCTAGGACAAGTAGCTTGCCCTCTTCCTGCCTTCCGTTGGCTGGGCTGTGTGGTGA
GCCTGTTGGACAAGGACCTCTTCCAGCTCTTGTGTCCTAGGCCACAGGGTGATGGGGAAGCCCAATGAGA
AGTCTCAATCACCTGGAGATTTCCCAAGATTCAGAGGGCTCAACGAGCTGTCAAGACAAGATTGAGGCTT
CACCGTCTCCTCCAAGGGTTCCAGAGTGAGGTGGGAGGCTGGTATCTGGACCAGACTGGCTCTGGAGAGT
AGGCGGCATTGAAAGAAGGTGGTACACCAGAGTCTAGACTCCCATGTGAAGCACAAGGATGCTATCTGCC
CCACCTGTCTCCTCTTCCAGCCTCACTTTCACCTGCCCTAGCACCCCATGCTCTGGCCCTCCCCAGCCTG
GAGCTACAAAGCCATCAGGACTGGACATGAGGTAGAGGCTGGGCAATTGGCCACTGCTCTTGAGACAGAA
CTCGCCCCCTCCTTAGTGTCCAGGGAGGCCTGCGGATGGAGAGGAAGGC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4224352), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 23071. Forward Primer - name:023071_F_IRAV32-35_P19_Cdx1, sequence:GAAACAGCAGCAGCAGCA; Reverse Primer - name:023071_R_SP6_IRAV32-35_P19_Cdx1, sequence:AGCCTTCCTCTCCATCCG. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:13233 same embryo
 EMAGE:13234 same embryo
 EMAGE:13231 same embryo
 EurExpress:euxassay_017696 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS