EMAGE mouse gene expression spatial database

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EMAGE:13298

1110018G07Rik RIKEN cDNA 1110018G07 gene ( MGI:1915747)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_017679. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_017679_01	euxassay_017679_02	euxassay_017679_03	euxassay_017679_04

euxassay_017679_05	euxassay_017679_06	euxassay_017679_07	euxassay_017679_08	euxassay_017679_09

euxassay_017679_10	euxassay_017679_11	euxassay_017679_12	euxassay_017679_13	euxassay_017679_14

euxassay_017679_15	euxassay_017679_16	euxassay_017679_17	euxassay_017679_18	euxassay_017679_19

euxassay_017679_20	euxassay_017679_21	euxassay_017679_22	euxassay_017679_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

13298_wholemount_strong.wlz

13298_wholemount_moderate.wlz

13298_wholemount_weak.wlz

13298_wholemount_possible.wlz

13298_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:13298_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9469
Entity Detected:	1110018G07Rik, RIKEN cDNA 1110018G07 gene ( MGI:1915747)
Sequence:	sense strand is shown >T9469 TTGGAGGGCAGATCCTTTCTGGTGACTTTTTGGCCTTTTCTTTTTCTTTTCTTTTTTTTTTTTTCAAATG TGCAAGTTAGAAGACAAGTGAAAGGAGTGGAAAGTTGCTGCTTTGGTGAATAACTTGGTTCTTAGAACAT GGGCCCTCGCTTAAAGTTGCAGCTGTGATCCTCGGCTGTCCGGTGGCGTTGAAGAGACCTGATGTTTTAC GTTATTGGTGGAATCATAGTGTCTGTGGTTGCATTCTTCTTCACAATTAAGTTCCTCTTTGAGCTTGCCG CACGTGTAGTCAGCTTTCTTCAGAATGAAGACCGTGAGCGCCGAGGGGACCGGACTATTTATGACTACGT GCGGGGAAATTACCTGGATCCCCGGTCCTGCAAAGTGTCCTGGGATTGGAAGGACCCCTATGAGGTGGGC CACAGCATGGCCTTCCGAGTGCATTTGTTCTATAAGAATGGACAGCCTTTCCCTGCACATCGGCCCGTGG GACTGCGGGTTCACATCTCTCACGTTGAACTAGCAGTGGACATTCCAGTGACCCAGGAAGTCCTCCAGGA GCCGAATTCTAACGTGGTGAAGGTGGCCTTCACTGTGCGCAAGGCTGGGCGCTATGAGATCACTGTGAAG TTGGGTGGCTTAAATGTGGCCTATAGTCCCTACTACAAAATTTTTCAGCCTGGAATGGTGGTTCCTTCCA AAACAAAAATTGTGTGCCATTTTTCTACTCTGGTGTTGACGTGTGGGCAGCCACACACTCTGCAGATAGT GCCCCGAGATGAGTATGACAACCCAACCAACAATTCCATGTCCCTGAGAGATGAGCACAGCTACAGCTTA GCCATTCACGAGCTTGGTCCTCAAGAAGAAGAGAATAATGAAGTCTCATTTGAGAAGTCAGTGACGTCCA ACAGGCAGACTTGCCAGGTGTTCTTGCGGCTCACCCTGCATTCCCGAGGTTGCTTCCATGCCTGCATTTC ATATCAGAACCAACCCATCAATAATGGCGAATTTGACATTATTGTCCTTAGTGAGAATGAGAAGAATATT GTTGAACGAAATGTGTCCACCTCAGGAGTGAGCATTTACTTTGAGGCTTACCTTTACAATGCTAACAACT GTACCAGCACACCATGGCATCTTCCTCCCATGCACATGAGCTCTTCTCAACGCCGGCCCTCCACTGCTAT TGAGGAGGACGATGAAGACTCACCCTCAGAGTGTCACACCCCTGAGAAGGTGAAGAAACCGAAGAAGGTG TACTGCTATGTGTCACCAAAGCAATTCTCTGTGAAGGAATTCTACCTGAAAATCATCCCCTGGCGCCTCT ACACCTTCCGAGTGTGCCCAGGAACAAAGTTTTCATACCTTGGCCCTGACCCTGTTCACAAGCTCCTCAC GCTGGTGGTGGATGACGGCATTCAGCCTCCAGTGGAGCTCAGCTGTAAAGAAAGGAATATCCTAGCAGCC ATTTTCATCCGTTCCTTGCACAAGAACATTGGAGGCTCTGAGACCTTTCAAGACAAGGTGAACTTTTTCC AGAGAGAGCTTCGGCAGGTACATATGAAGAGACCTCATTCCAAAGTCACTCTGAAGGTCAGCAGACACGC CTTGTTGGAGTCGTCTTTGAAGGCCACTCGGAACTTTTCCATCTCAGACTGGAGCAAGAACTTTGAAGTA GTTTTCCAGGATGAGGAAGCTTTGGATTGGGGAGGGCCTCGCCGGGAATGGTTTGAGCTAATCTGCAAAG CACTGTTTGACACCACCAGTCAGCTCTTCGCCCGGTTCACTGACAGCAACCAAGCACTAGTGCATCCTAA CCCTAACCGCCCGGCTCACCTGCGCTTGAAGATGTATGAGTTTGCAGGGCGGCTGGTGGGCAAGTGTTTG TATGAATCCTCTCTAGGGGGAGCCTACAAGCAGTTGGTCCGTGCCCGGTTCACTCGGTCTTTCCTGGCCC AAATCATAGGACTCCGTATGCATTACAAGTACTTTGAAACGGATGACCCAGAATTCTATAAGTCCAAGGT GTGCTTTATCCTCAACAATGACATGAGTGAGATGGAGCTGGTCTTTGCAGAAGAGAAATACAACAAATCA GGTCAACTGGATAAGATTGTAGAACTCATGACAGGCGGAGCTCAAACCCCAGTCACCAATGCAAATAAAA TCTTCTATTTAAACCTGCTGGCTCAGTATCGGCTGGCCAGTCAAGTGAAAGAGGAGGTGGAGCATTTCCT GAAAGGCTTGAATGAGCTGGTTCCTGAGAACCTCCTGGCTATTTTTGATGAGAATGAGCTTGAGCTGCTG ATGTGTGGGACTGGAGACATCAATGTATCTGACTTCAAAGCCCATGCTGTAGTGGTTGGTGGATCCTGGC ATTTCAGAGAAAAGGTCATGAGGTGGTTTTGGGCTGTGGTTTCCAGTCTGACCCAGGAGGAACTGGCTAG GCTGCTTCAGTTTACAACAGGCTCTTCTCAGCTCCCACCTGGAGGATTTGCTGCCCTCTGTCCCTCATTT CAGATTATTGCTGCTCCAACCCATAGCACGCTTCCTACTGCACACACATGTTTTAACCAACTGTGCCTCC CTACATATGACTCATATGAAGAGGTGCACAGGATGCTACAGCTGGCCATCAGTGAGGGTTGCGAGGGCTT TGGCATGCTCTGACCGCTCCTCTGTCACCTGCTTGGCTCCCAAGCTCTCTAGAGCATCTGGACACATGTT AACAAGCATAGCCACTGACCTTAACCACAACCATTAGCCAGAAGATACTGCATGCTCCCTTGTGTCTGGA GTATTCTGTCATCTGCAAGCCCTGTTCTTACCTCACCTGTCCACGTTCACCACAGGCCACTTGAGCACGT GGCACCTATCTGAGCTCTACTCAGTCATGAGAGGAGGACCATGCTGCTGTCACTTCGTTGGTCCCTTGAA GATCTCTGTGACCGGATCTGCCTCCGTGGCTGGGAGACATTCATAACACAGAGGACTCAGTTCTGTTGGA AAGCCAGCATGTGAGACCCTTCCACCATGCCTCATTCCAGCCCTCCTTGAGCTCACTACTTGACCAGACT GGGTAATGCATCACCTCTTCTCATCAGTGGTCAGGAGAAGTGCAGCTAGAAAGTGGCCCACACAAGCCGT CTGATTTGTCCTCCCACATAATGGCAGGCACAGGCCATGGCACTGGATTAGTTCTCATGGGGACTGGTAG TACAAAAGGATGTCTTTAAGGTGACAGAACTGGAAAAGATACTCCCTGTGGGCATTTTTAAAGATGATCA TTAATCTATAAGGAATTTGCTAAGCTTTCTCTTGAATTTGAGCCAGTGAGAAAAGCAGTCAGAAGAATGT GAAGGATGTCTGCGCTGCAGCCTCCAGTGCTGGGTACGCTTCTCTCGTGGGGAAGGGCCGTGTCCAGGCA TGTGGATGGCTTGAAGACTACTGATGCTTTCCTCTGAATTGTTCTTTGCACTGAAGGAGGACTTGGACTG ACCTCCGACTTACATAGTTTGTTAAGAGCTGTCTTTAGCATTCTGCTGGAAGAATTTTGGGAGCAACAGA CTGGGACAGAGCCTGCCAGCTGTGGTGGTGATCTTTGGCAGTGCTAAGGCAAAGGAGCGGTGAAGCCACT GGGGACAGACAAGGTGGAGACCCAGCAGCAGTAAATACCTAGCAATTCCAAGGACTTGGTTTCATCAGTT ACCAGGAAGTGGGGGAACCATGGAGGGAGAACGCTATATTGGGTTCACAGTTACATGGTGATCAAAGAGA ACTTCTCAGTCTCCAGGAAGATAGCATCTTTTCATGAGTGTTTGAATGAAAACAACACGAAGGCTCAATA TCACATGGATTTCCCAGTTTCTGTCTTTAATAAGGCTTTCCTACAAGCCACTATTTTCCATGGGGCACTC ACTCAGAATATTACAAGCCATTTTATTGCCAAAACCAGCAAGTACACCGAATCCTGAGACAAGGCAGTTC TTGTGACAGTGCCTTGGCCTCCTGGAAGCAGTCTGAGCCCTCCTGTTCCCAGGATCACGAGAAACAAGCT CTCCTGAGCTGCTAGAACCCTGCCTGACCTCCTTTGCAGTCATCATCTGTCTTTTCTTGGCGTGGGTGCT CACCTCACTTATCCTCGGGGTTTGGGACCTGGCATCAGGACCTCTCCACCCAGGATCCTCCATGCCACAT GGTCACTGCTCTCCTCAGGGACTGGGACAAGGTGCTGCCGCCTGCCCACAGTTTTCCCAAGGAACACGTA CAAGATCATTTAGCCACTACTCTGCTGCCTCTCAGCCTCTGCTGGGGCTTCCAGCTGGGTACATGGCTGC TTGGCCGTTTGGGGCGGTTCTTCCTCCTAGGTTCTGCAATCCAGGCTCCAGCACCCCTCTGCAGACTACA CAGGGGGTCAGTGTGTGTGTGTGACTAGACCTCTCATTTTAAGCTCTAGTCGTAGCACTTTTTCAGAGTC TCCTAGGCGCTGTTGCAGCCCAGCTGGGGCAGCTAGCATGCCAGGTTGGTCTTTAGGCACCAGAGTCTTT AACAAAAAAATCCTCTAGTACTGTGTGGTTTTCTATTCTTCCAGTTCACTCTCCTGACTGTTCAGAAGCA TTTTGCTCTCTTTTGCATTTTCTTTTACCTTTTTTTTCTAATACTGCTTTGGTACTAGCCAGTGTGGGGA AGAGATACAGTATGTTGGACAGATAAAAACATGTGTTATTTCTTGGTCAATTTTCTATTCATATTCCTTA TTTTGGCCAGTTCTTTTGTTTGTGCTTTGTAACATAGGTACTTGGGAGACCAGCTGCCCTCCTGGCTTTT GGCTTTTTGGTGTCCTTGAAGGAGACCAGTCATGAGTACCAAGGAATTTGTCAGCTTGGTTCTAGAACTT AGCAGAGGTTGAGCTCTGCTGCACATTGGCAGACCAGGTCAGGATGTCTGCAGTTGGAGATGTAAATATT TTGTACAGTAAATAAAATGCCTACAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAA
Notes:	The probe template was PCR amplified from IMAGE:30355406 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30355406 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:13299 same embryo
	EurExpress:euxassay_017679 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source