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EMAGE:13380

Kctd4 potassium channel tetramerisation domain containing 4 ( MGI:1914766)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13380 EMAGE:13380 EMAGE:13380 EMAGE:13380 EMAGE:13380
"Pseudo-wholemount" of euxassay_017518. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017518_01 euxassay_017518_02 euxassay_017518_03 euxassay_017518_04
EMAGE:13380 EMAGE:13380 EMAGE:13380 EMAGE:13380 EMAGE:13380
euxassay_017518_05 euxassay_017518_06 euxassay_017518_07 euxassay_017518_08 euxassay_017518_09
EMAGE:13380 EMAGE:13380 EMAGE:13380 EMAGE:13380 EMAGE:13380
euxassay_017518_10 euxassay_017518_11 euxassay_017518_12 euxassay_017518_13 euxassay_017518_14
EMAGE:13380 EMAGE:13380 EMAGE:13380 EMAGE:13380 EMAGE:13380
euxassay_017518_15 euxassay_017518_16 euxassay_017518_17 euxassay_017518_18 euxassay_017518_19
EMAGE:13380 EMAGE:13380 EMAGE:13380 EMAGE:13380 EMAGE:13380
euxassay_017518_20 euxassay_017518_21 euxassay_017518_22 euxassay_017518_23 euxassay_017518_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13380Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13380_wholemount_strong.wlz
13380_wholemount_moderate.wlz
13380_wholemount_weak.wlz
13380_wholemount_possible.wlz
13380_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13380_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8240
Entity Detected:Kctd4, potassium channel tetramerisation domain containing 4 ( MGI:1914766)
Sequence:sense strand is shown

>T8240
GGCTGGGAAGGAATAAAGGCGTGCTTGTGTGGTAGTGTTTCTTTTTTAAAAGGAAAAAAAAATCTCCAAG
CCAAGAAGAACAAGCTGAAATAGCATCTTGAAAATGGAGCGTAAAATAATCAGAAGAGAAAAGGAAAGGG
AGTACGAAGGGAGGCACAACAGCGTGGAAGATGCCGAGCAAGGCAAGAACTGCAAATCCACGCTGATGAC
CCTCAACGTTGGTGGATATTTATATATTACTCAAAAGCAGACACTGACCAAGTACCCAGACACTTTCCTT
GAAGGTATCGTAAATGGGAAAATCCTCTGTCCATTCGATGCTGATGGCCATTACTTCATAGACAGGGACG
GGCTTCTCTTCAGGCATGTCCTAAACTTCCTACGAAATGGAGAACTTCTACTACCCGAAGGATTTCGAGA
AAATCAACTTCTTGCTCAAGAAGCAGAATTCTTCCAGCTCAAGGGGCTGGCAGAGGAGGTGAAATCCAGG
TGGGAAAAAGAACAGCTGACCCCCCGAGAGACTACTTTCTTGGAAATAACAGATAATCACGATCGCTCAC
AAGGACTGAGAATCTTCTGTAATGCTCCTGATTTCATATCAAAAATAAAATCTCGCATTGTTCTGGTATC
CAAAAGCAGGCTGGATGGGTTTCCAGAGGAGTTCTCTGTGTCGTCAAATATCATTCAATTTAAATACTTC
ATCAAGTCTGAGAACGGCACTCGACTTGTACTAAAGGAAGACAACACCTTTGTCTGCACCTTGGAAACTC
TTAAGTTTGAGGCCATAATGATGGCTTTAAAATGTGGGTTTAGACTGCTGACTAGCCTGGACTGCTCCAA
AGGGTCAATTGTTCACAGCGATGCACTTCATTTTATCAAGTAATTACCTGTCTCATGAACAAAGGCAACA
AGCATGCAGCCAGCAAGCTTCAGAAGCCACAGAATCAAAGGCATCCCAAACAACGTGCCCAGCCAGCTAG
TCCAGAGCCCGGCTGCTAAGCAAGTACTGTGAGCTAACGGTATGTAAATCTATCACTAAAGATGTCCTTC
TCTGGGGTGTTCTGCCATCACATTTCCACCGACAGTGAAGCTGTGGTCTTCTAAACTGTAAATAAAGACA
ATGCTTTTGCTATTTATTTTTTTTTTTTCCCCTTAAGCTGTCTTTCAATGAGAATGTCTTGGGTACTTCA
TCTATCATTCACTACTGCAAATGCTAACAACATACGATTCAAAATCTTTTCTACTTAAGAGCAAAAATCC
ATGAAGAAGATGAACTGGTTTATAAAATAAACATGGAGAGCAAAATAAATGTACAGAGCTACCTAAAGCA
GGGGTAACAGTGAATCAAAATGTGACTGTAAAACACATTCGAGCTACTGATTTGACTTTTAAAATAGCAG
GCACCAAAAGCTTTATTATAGCTCCTGTATTTCATACTAGAATTATGGCTAAATTGATATTTTGCTGAAA
ATTTCTAGGAAACTGCTTGATAACAATAAAAAATAAATAAAAGCATTGCTAGCTTCAAAAAAAAAAAAAA
AAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:1332429 using vector (pT7T3D-PacI) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:1332429 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:13381 same embryo
 EMAGE:13382 same embryo
 EMAGE:13377 same embryo
 EMAGE:13379 same embryo
 EMAGE:13378 same embryo
 EurExpress:euxassay_017518 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS