EMAGE mouse gene expression spatial database

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EMAGE:13382

Sipa1l1 signal-induced proliferation-associated 1 like 1 ( MGI:2443679)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_017453. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_017453_01	euxassay_017453_02	euxassay_017453_03	euxassay_017453_04

euxassay_017453_05	euxassay_017453_06	euxassay_017453_07	euxassay_017453_08	euxassay_017453_09

euxassay_017453_10	euxassay_017453_11	euxassay_017453_12	euxassay_017453_13	euxassay_017453_14

euxassay_017453_15	euxassay_017453_16	euxassay_017453_17	euxassay_017453_18	euxassay_017453_19

euxassay_017453_20	euxassay_017453_21	euxassay_017453_22	euxassay_017453_23	euxassay_017453_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

13382_wholemount_strong.wlz

13382_wholemount_moderate.wlz

13382_wholemount_weak.wlz

13382_wholemount_possible.wlz

13382_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:13382_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9235
Entity Detected:	Sipa1l1, signal-induced proliferation-associated 1 like 1 ( MGI:2443679)
Sequence:	sense strand is shown >T9235 CGGACGACGCGCCCGGGACGCGCGGCTGCACCGGGAAGCCCAGGCCAAGCGGTTTTGAGAGATTGCTACA ATTTGGACTCACAAGCAAGATTTACTGCAAACTTTGAGATGGAGTAGGTACTTTTCAGATGGTGGCTGGC TGCCCAGAAAGATGCTGTAGTGAAACTAGGAGAAGTTGATTTCCAGGTCATATGTCATTAGTGTGGACGC TGCTGTCTTAAGTCTGTGGCCATGGCACCAGAACACAGGGAAGCGTGGGATTCTGGTGACCACAGAGCCC CAGTGATGCAAGCTCTACTCAGTCTTAGGGACTGAAGGAAGCCTGCTGTTAGAGTGAGGCACAGGGACTG AAGGAAGCCTGCTGTTAGAGTGAGGCACAGGGACTGTTGTGGATTACAATGTTTGGAAGATCTGGGTTCT CTGTCGTCTGCAAACAAGGCATCATTTAACCTTTTAAATGAAAAGGCTTAAGATCTCAACACCACTGCTG TATTTTCTGGAAGCCATTCTCTAAAGCAGAAGTGCATATTTAAAACGCAAACATGGTGATCCTTTCTGCA GGGATTTAAGTGATCGCTTTTTACATCATGACCAGTTTGAAGCGGTCGCAGACCGAAAGACCTGTCACCG CTGACAGAGCCTCTGTTGTCAGCACAGATGGCGCCCCCAAAGTCCACACCGATGACTTCTACATGCGTCG CTTCCGCTCTCAGAATGGCAGCCTAGGATCATCAGTCATGGCTGCAGTGGGGCCCCCTCGAAGTGAAGGC CCTCACCATATCACCTCAACCCCCGGGGTCCCCAAGATGGGGGTTAGGGCAAGAATAGCAGATTGGCCTC CGAGAAAGGAAAATGTAAAAGAATCCAGCCGTTCAAGCCAGGAAATAGAAACCTCAAGTTGCCTTGAGAG CCTGTCCTCCAAAGGCAGTCCTGTGAGTCAGGGGAGTTCTGTTAGCCTCAATTCCAATGACTCAGCCATG CTGAAGAGCATACAGAACACCCTGAAGAACAAGACAGGGCCAGCGGAGAGCATGGACTCCAGATTCCTCA TGCCTGAAGCCTACCCCAGTTCCCCCAGGAAAGCCCTTCGCAGAATTCGGCAGCGCAGCAACAGTGATAT CACCATAAGTGAGCTTGATGTGGATAGCTTCGATGAATGTATCTCCCCAACCTACAAGTCGGGGCCATCA TTGCACAGGGAATATGGCAGCACATCTTCAATCGACAAGCAGGGAACATCCGGAGACAGCTTCTTCGATT TGTTAAAGGGCTATAAAGATGACAGATCTGACCGAGGTCCAACTCCAACCAAACTCAGTGACTTCCTCAT CACTGGTGGGGGCAAGGGTTCTGGTTTCTCCTTGGATGTGATCGATGGCCCCATCTCACAGAGAGAGAAC CTCAGGCTTTTCAAGGAAAGGGAAAAACCACTCAAGCGACGCTCTAAGTCTGAGACTGGAGACTCGTCCA TTTTTCGTAAATTGCGCAATGCCAAAGGTGAAGAACTCGGGAAATCATCAGACCTTGAAGACAACAGATC AGAAGATTCTGTGAGGCCCTGGACATGTCCAAAGTGCTTTGCCCACTATGATGTCCAGAGCATATTGTTT GACTTGAATGAAGCCATTATGAACAGACATAATGTGATTAAGAGGAGAAACACCACAACAGGAGCTTCGG CGGCTGCGGTGGCATCCTTGGTCTCCGGACCTCTGTCTCACTCAGCCAGCTTCAGCTCTCCCATGGGCAG CACAGAGGACCTCAACTCCAAAGGAAGCCTTGGCATGGACCAGGGAGATGACAAGAGCAATGAACTCGTC ATGAGCTGTCCGTATTTTCGGAATGAGATTGGGGGAGAAGGTGAGAGGAAGATCAGCCTGTCCAAGTCGA ATTCTGGCTCATTTAGTGGGTGTGAGAGCACATCCTTTGAGTCTGCCCTCAGCTCTCACTGCACCAACGC GGGCGTGGCAGTTCTCGAAGTGCCCAAGGAAAGCTTGATGCTGCATCTGGACAGGGTGAAAAGGTACACC GTGGAACACGTGGATCTTGGCGCATACTATTACAGGAAGTTCTTCTACCAGAAGGAACACTGGAACTATT TTGGGGCTGATGAGAACCTCGGTCCAGTGGCTGTGAGCATTCGAAGGGAAAAACCAGAAGACATGAAGGA AAACGGATCTCCATACAACTACCGAATAATATTCAGGACTAGTGAGCTCATGACGCTGAGGGGGTCTGTC CTGGAGGATGCCATTCCCTCCACGGCCAAGCACTCGACAGCCAGGGGATTGCCTCTGAAAGAGGTGCTGG AACACGTGATCCCAGAGCTCAACGTGCAGTGCCTGCGCTTGGCCTTCAACACACCCAAAGTCACAGAGCA GCTCATGAAACTGGACGAGCAAGGGCTGAACTATCAGCAGAAAGTAGGCATCATGTACTGCAAAGCAGGC CAGAGCACGGAGGAGGAGATGTACAACAACGAGTCTGCAGGCCCAGCCTTTGAGGAGTTCCTTCAGCTGC TGGGGGAACGAGTCCGGCTAAAAGGATTCGAGAAGTATCGTGCGCAGCTTGACACCAAAACTGACTCCAC TGGAACCCACTCTCTGTACACAACCTACAAAGACTATGAGATAATGTTCCACGTCTCCACCATGCTGCCC TACACACCTAACAACAAGCAACAGCTCCTGAGGAAGCGGCACATTGGGAATGACATTGTGACAATAGTTT TCCAAGAGCCTGGAGCACAACCATTCAGCCCGAAAAACATCCGGTCTCACTTTCAGCATGTTTTTGTCAT TGTCCGGGCTCACAACCCTTGCACTGAGAGTGTCTGTTACAGTGTGGCAGTCACCAGGTCCAGAGATGTA CCTTCTTTTGGACCTCCCATCCCTAAAGGGGTCACCTTCCCCAAGTCAAATGTGTTCAGGGACTTCCTTT TGGCCAAAGTGATAAATGCAGAAAATGCTGCTCATAAATCAGAGAAGTTCCGGGCCATGGCGACAAGGAC CCGCCAGGAATACCTGAAAGATCTGGCAGAAAAGAATGTCACCAACACACCTATTGACCCTTCTGGCAAG TTTCCATTTATTTCTCTGGCCTCCAAGAAGAAGGAAAAGTCTAAGCCTTATCCAGGAGCTGAGCTCAGTA GCATGGGGGCCATTGTGTGGGCTGTCCGGGCCAAAGACTACAACAAGGCCATGGAGTTCGACTGCCTCCT TGGGATCTCCAGCGAGTTCATCGTCCTCATTGAGCAGGAGACAAAGAGTGTGGCTTTCAATTGCTCCTGC AGAGATGTCATAGGGTGGACTTCCAGCGACACCAGCCTCAAAATCTTCTATGAGCGGGGAGAATGTGTGT CGGTGGAGAGCTTCATTAGCGGTGAAGATATCAAAGAAATTGTCAGAAGGCTGCAGTTTGTTTCAAAAGG TTGTGAATCTGTGGAAATGACTCTGCGAAGAAATGGGCTGGGGCAGCTTGGCTTCCATGTCAACTATGAG GGCATTGTGGCGGATGTAGAACCCTACGGCTACGCATGGCAAGCAGGGCTGAGGCAGGGCAGCCGCCTGG TGGAGATCTGCAAGGTAGCAGTGGCCACCCTGAGCCATGAACAGATGATCGATCTCTTGAGAACATCAGT CACAGTGAAGGTTGTCATTATCCCTCCCCATGACGACTGCACCCCACGGAGGAGTTGCTCAGAAACCTAC CGCATGCCAGTGATGGAGTACCAGATGAATGAAGGCATTTCCTACGAGTTCAAGTTTCCCTTCCGGAATA ATAACAAATGGCAGCGGAATGCCAGCAAGGGTGCTCATTCGCCCCAGGTTCCATCTCAGCTGCAGAGTCC CATGACCTCACGACTGAATGCTGGGAAGGGAGATGGGAAAATGCCCCCTCCAGAAAGAGCTGCCAACATC CCTCGAAGCATCTCCAGTGACGGGCGCCCACTGGAAAGGAGGCTGTCTCCTGGTTCGGACATCTATGTGA CAGTCTCATCCATGGCTTTGGCGAGATCCCAGTGCCGTAACTCTCCCAGCAACTTGTCTTCGTCCAGTGA GACTGGCTCTGGAGGTGGTACCTACAGACAAAAATCCATGCCCGAAGGGTTTGGGGTGAGCCGAAGATCC CCAGCTTCCATCGACAGGCAGAACACCCAGTCGGATATAAGTGGCAGTGGAAAATCCACTCCCAGCTGGC AGAGAAGTGAGGACAGCCTTGCCGACCAGATGGAGCCGACGTGCCATCTCCCAGCAGTATCGAAGGTACT GCCTGCTTTCCGAGAGAGCCCCAGTGGGAGATTGATGCGGCAGGATCCAGTGGTTCACTTGTCTCCAAAC AAACAAGGCCATTCTGACAGCCACTACTCCAGCCACTCCAGCAGCAACACGCTCTCCAGCAACGCCTCGA GTGCACACAGTGACGAGAAGTGGTACGATGGGGACCGCACGGAGTCCGACCTCAACAGCTACAACTACCT ACAGGGCACGTCTGCCGACAGCGGGATTGACACCGCCTCCTACGGCCCCAGCCATGGCAGCACGGCCTCC CTGGGGGCCTCCACATCCTCACCTCGTTCAGGGCCAGGCAAAGAAAAGGTGGCTCCCCTGTGGCACAGCT CCAGTGAAGTGCTCTCCCTGGCAGATCGGACCTTAGAGACTGAGGGCCACGGCATGGACAGGAAAGCAGA GTCCTCCCTGAGCCTGGACATCCACAGCAAGAGCCAGGGCGGGTCAAGCCCGCTGAGCAGGGAGAACAGC ACCTTCAGCATAAATGATGCTGCGTCCCACACCAGTACCATGAGCTCCCGACACTCTGCCAGCCCAGTGG TATTCTCCAGTGCCAGAAGTTCCCCCAAAGAGGAGCTTCACCCCACCGCATCCTCCCAGCTCGCACCGTC CTTTTCCTCTTCTTCCTCATCCTCCTCTGGACCTAGGACTTTCTACCCTCGCCAGGGCGCCACTAGCAAA TATCTGATTGGATGGAAAAAGCCAGAAGGAACCATTAACTCCGTGGGATTTATGGACACACGAAAGCGAC ATCAGAGTGATGGCAATGAGATAGCCCACACTAGGCTTCGAGCCTCAACCAGGGACCTGCAGGCATCCCC AAAGCCGACCTCCAAGTCTACCATTGAGGAAGATCTAAAGAAACTCATCGACCTTGAGAGCCCAACTCCC GAATCCCAGAAGAATTTCAAGTTCCATGCACTGTCCTCCCCGCAGTCCCCGTTCCCCACTACCCCTACCT CCCGGCGGGCCCTGCACAGGACTCTGTCAGATGAGAGCATTTACAGCAGCCAGAGGGAGCATTTCTTCAC CTCCAGGGCTTCGCTTCTAGACCAAGCCCTGCCCAACGATGTCCTCTTCAGCAGTACCTACCCATCTCTC CCCAAGTCACTTCCACTGAGGAGGCCATCTTACACGTTGGGAATGAAGTCATTGCATGGAGAGTTCTCTG CCTCGGACAGCTCCCTCACCGACATCCAGGAGACCCGAAGGCAGCCTATCCCTGACCCTGGCCTGATGCC CCTGCCTGATGCAGCTTCAGATTTGGACTGGTCCAACCTAGTAGATGCCGCCAAAGCCTATGAGGTCCAG AGAGCCTCATTTTTTGCTGCTAGTGATGAAAACCATCGCCCCCTGAGCGCGGCCTCCAACAGTGACCAGC TGGAGGAGCAGGCCCTGGTCCAGATGAAGTCCTACAGCAGTAAGGACCCCTCTCCCACTCTGGCTTCTAA GGTGGACCAGCTGGAAGGTATGCTGAAAATGCTTCGAGAAGATTTGAAGAAGGTAAATGCTCTCAGAAAA AGAAGACAAGGCCCAGCTGCAGGCGGAAGTTGAGCACCTGCGGGAGGACAACCTGAGGCTGCAGGAGGAG TCCCAGAACGCCTCGGACAAGCTGAAGAAGTTCACAGAGTGGGTCTTCAACACCATAGACATGAGCTAGG GCCAGCCGAGGGGAAACGAGAAAGGGACAGGCTGCCCTATGTGGGCCCCTAAAGCACCCATTCACGCCTT GGAAAGTATTCTCAGAGTCCCCAGCGTCCCAGCCTGTTCATATCGGACAGTGCACAGCACAATTGCAGAT CAACAATCATTATCTGCCTTTTTTAGAAAAGAAAAACAAAAAATTAAATAAAAATTTTAAAAAGTAAAAT AAAAATTTAACTGCTCAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6834753 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6834753 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:13381 same embryo
	EMAGE:13377 same embryo
	EMAGE:13380 same embryo
	EMAGE:13379 same embryo
	EMAGE:13378 same embryo
	EurExpress:euxassay_017453 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source