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EMAGE:13389

Farp1 FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) ( MGI:2446173)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13389 EMAGE:13389 EMAGE:13389 EMAGE:13389 EMAGE:13389
"Pseudo-wholemount" of euxassay_017780. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017780_01 euxassay_017780_02 euxassay_017780_03 euxassay_017780_04
EMAGE:13389 EMAGE:13389 EMAGE:13389 EMAGE:13389 EMAGE:13389
euxassay_017780_05 euxassay_017780_06 euxassay_017780_07 euxassay_017780_08 euxassay_017780_09
EMAGE:13389 EMAGE:13389 EMAGE:13389 EMAGE:13389 EMAGE:13389
euxassay_017780_10 euxassay_017780_11 euxassay_017780_12 euxassay_017780_13 euxassay_017780_14
EMAGE:13389 EMAGE:13389 EMAGE:13389 EMAGE:13389 EMAGE:13389
euxassay_017780_15 euxassay_017780_16 euxassay_017780_17 euxassay_017780_18 euxassay_017780_19
EMAGE:13389 EMAGE:13389 EMAGE:13389 EMAGE:13389
euxassay_017780_20 euxassay_017780_21 euxassay_017780_22 euxassay_017780_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13389Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13389_wholemount_strong.wlz
13389_wholemount_moderate.wlz
13389_wholemount_weak.wlz
13389_wholemount_possible.wlz
13389_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13389_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T40419
Entity Detected:Farp1, FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived) ( MGI:2446173)
Sequence:sense strand is shown

>T40419
ACATTGTCTTCCCCATACCAACCTCTTTGGACAGCCTTTCCCTCCAGGCCTAGGGGGTGGGAGGGCGGTG
TCTTGCCATTCTCCAGGGGCGCTTTAGTTTGTGCCACTACTGACACATTGTCATCAAGAGTGCCAAACGA
CAGTCTCGTCCTGCAGCATGGCCAGCGCAGGGCCATACATCCGTTCACCTGCAGACTGCTGTTTCCCAAA
CGGATTTTTCCAGTGTTCACAACACATGGCGCAGTCTTAAGTAAATGAGATCATTTTGGATTTCATTTTT
TTTTCCAATCTTTCTACTTTTATAATAGGACATTCGTAGGACTCAACTTTTCTCAGATAAGCAACTTGTG
GAGTACTCCATTCCACCGAAGGGGTGGGCTCCAGCGAGACCCTGGTCGCCACACCTACTTTCTTGGCGGA
AGTTGACCAAGCTGTTTGTGATTCCTATTTACAAGATGTAGTGGGGTTGTTTTCTGTGGAGAAGCAGATA
CCCAGTGCAATACGTGGGCGTCAGCGCCCTGTGCGTGGCGTGTACAGTGGCGGCTCCTAGGCCGTGATGT
TTTG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 154907. Forward Primer - name:154907_F_cDNA_TC1563145, sequence:ACATTGTCTTCCCCATACCAAC; Reverse Primer - name:154907_N_SP6_cDNA_TC1563145, sequence:CAAAACATCACGGCCTAGGAG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:13390 same embryo
 EMAGE:13388 same embryo
 EurExpress:euxassay_017780 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS