EMAGE mouse gene expression spatial database

EMAGE:13613

F2rl1 coagulation factor II (thrombin) receptor-like 1 ( MGI:101910)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_017779. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_017779_01	euxassay_017779_02	euxassay_017779_03	euxassay_017779_04

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euxassay_017779_10	euxassay_017779_11	euxassay_017779_12	euxassay_017779_13	euxassay_017779_14

euxassay_017779_15	euxassay_017779_16	euxassay_017779_17	euxassay_017779_18	euxassay_017779_19

euxassay_017779_20	euxassay_017779_21	euxassay_017779_22	euxassay_017779_23	euxassay_017779_24

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Expression Pattern Description

Spatial Annotation:

Annotation colour key:

wholemount mapping

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Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T323
Entity Detected:	F2rl1, coagulation factor II (thrombin) receptor-like 1 ( MGI:101910)
Sequence:	sense strand is shown >T323 CAAACCTTAGTGATGACTGCAGACACAGAACCATGGAGCTGAGCCTGCTTCTGCTTGCCAGGGCACCACT GTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTTTGAGCCTCTTTTTTTGGTCAGTTTATGATGAATTT GCCTATTGGTTTATTGGGATTTTCAGTTCCTTTATTACTTTGTTGTAATTTTGTGTGTTTATTAGTCAAG AAAAAGAAGATGAGGCTCTTAAAAATGTAAATAAAATTTTTGGTTTTTTGGTTTTTTAACTTGGGCCAAC TACAAATACTGCTTAGGTTTTTTTCTAACTTAATTTTTAACTACATCATGTGAACTTAAGACATTTTCAT GATAAAGCATTACTGTAGTGTCAGTTTTCCCTCATCCTCGATCATAGTCCTTCCCATGAAGCAAGGGCCC TTCCCCTCCCCCCCCTTTGCCGTTTCCCTCCCCACCAGATAGTCCCCTGTCTGCTTTAACCTACCAGTTA GTATTTTATAAAAA
Notes:	The probe template was PCR amplified from IMAGE:3154077 using vector specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:3154077 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:13615 same embryo
	EMAGE:13616 same embryo
	EMAGE:13612 same embryo
	EMAGE:13614 same embryo
	EMAGE:13617 same embryo
	EurExpress:euxassay_017779 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source