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EMAGE:13759

Srf serum response factor ( MGI:106658)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13759 EMAGE:13759 EMAGE:13759 EMAGE:13759 EMAGE:13759
"Pseudo-wholemount" of euxassay_019526. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_019526_01 euxassay_019526_02 euxassay_019526_03 euxassay_019526_04
EMAGE:13759 EMAGE:13759 EMAGE:13759 EMAGE:13759 EMAGE:13759
euxassay_019526_05 euxassay_019526_06 euxassay_019526_07 euxassay_019526_08 euxassay_019526_09
EMAGE:13759 EMAGE:13759 EMAGE:13759 EMAGE:13759 EMAGE:13759
euxassay_019526_10 euxassay_019526_11 euxassay_019526_12 euxassay_019526_13 euxassay_019526_14
EMAGE:13759 EMAGE:13759 EMAGE:13759 EMAGE:13759 EMAGE:13759
euxassay_019526_15 euxassay_019526_16 euxassay_019526_17 euxassay_019526_18 euxassay_019526_19
EMAGE:13759 EMAGE:13759 EMAGE:13759 EMAGE:13759
euxassay_019526_20 euxassay_019526_21 euxassay_019526_22 euxassay_019526_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13759Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13759_wholemount_strong.wlz
13759_wholemount_moderate.wlz
13759_wholemount_weak.wlz
13759_wholemount_possible.wlz
13759_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13759_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
submandibular gland primordium
moderate moderate
regionalmoderate expression: see section 07 08 09 10 17 18 19 20
bladder
moderate moderate
regionalmoderate expression: see section 14 15 weak expression: see section 13 16
metanephros
moderate moderate
regionalmoderate expression: see section 10 11 weak expression: see section 12 19 20
urethra of male
weak weak
regionalweak expression: see section 15 16
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T55190
Entity Detected:Srf, serum response factor ( MGI:106658)
Sequence:sense strand is shown

>T55190
TGGAGGGAACCACTGTTAGCGGTCTCTTCCTCCCCTTGGTCTTCCCCCTTCTCCCAGCTGCTTTACTTAA
GAGTTGATTTTGAACTTTTTATTTGAGGAGATGACGTGAAAACAAATCTATAAATATATATTTTTAAAAT
ATTTAACTTTTTTTTAATGGCGTTTTTCTCATCCCCCTCCCTGCCCAAACTCCTCTTGGGGAAGCTCTTG
GGCTCCCTAGAACTGTCTGGGCCCCTGGGGACAGCCACCCCATGAGCTTGGGGTCCACCAGTGTGTGTGT
GTGGGAGATTCTGGGATTGCTCCACATCCTGGGTTCTTTCCAGGAGAAAGGTGGGGGAGGGGCCCTCAGG
CCAAGCCACAGAAGGGGGATGGGAGGTCCCGCAGTTCTAGGCCTCTTTTGCCCTCTAGGGTTGTTGCTAG
GAAAAGGGAAGATGGAGACCAAATGTGGGGGTGGGGTGGGAGGGGTCAGGGAGAGGAGATTGATGTCCTT
TGTGCCACAGTATGGTCGTTGCAGCCTGTGCTCCCCCAGGCTTGCAGATACCTGGGGCCCAAGGTGCAGT
GGGCAGGATGGAGTTCGGGAGGTAGGGAGATACAGGAATGGGGGTCAGAGGTAAAAGCTCTTGGGCTGAG
TGCAGCAATGGGGGGCCAGAGGTGGGCAGCTCTCCCAGGGAGTGAGCAGCTACTGTAACTTTTTTAAATT
AAGACAAAAAGCCTTGAAGAAAATGACTTTATTTTTCTAAGTGTAACCTCAGTATTTATGTAATTTGTAC
AGGGCCATGCCCCATCCCTTAAAATCCCTTTGGGGACCTTGAGGGTGGGCTAGCATAGGGGAGGGTGTTT
TACCCTGTGTCAGAGCCAGCCTAAACCACCTGTATCCATTAAAGGAGCTTTTTCCGGGAGGGCAGTTGGG
GTAGGGTGTCACTAAACCCTTGTTGCTGCCTTCAGTAGGAACAAGCCTACTTCTGCGGTTAGGTGGAGGG
GTTGGGAAGGTTTTATGCACAGCCTACGTTTCATGGGGATGATCTGCTGACGTTTAAGAGCCC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TGGAGGGAACCACTGTTAGC; Reverse Primer - name:unspecified, sequence:GGGCTCTTAAACGTCAGCAG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:MGI:4828438 same experiment
 EurExpress:euxassay_019526 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS