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EMAGE:13870

Mir339 microRNA 339 ( MGI:3619354)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13870 EMAGE:13870 EMAGE:13870 EMAGE:13870 EMAGE:13870
"Pseudo-wholemount" of euxassay_019274. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_019274_01 euxassay_019274_02 euxassay_019274_03 euxassay_019274_04
EMAGE:13870 EMAGE:13870 EMAGE:13870 EMAGE:13870 EMAGE:13870
euxassay_019274_05 euxassay_019274_06 euxassay_019274_07 euxassay_019274_08 euxassay_019274_09
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euxassay_019274_10 euxassay_019274_11 euxassay_019274_12 euxassay_019274_13 euxassay_019274_14
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euxassay_019274_15 euxassay_019274_16 euxassay_019274_17 euxassay_019274_18 euxassay_019274_19
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euxassay_019274_20 euxassay_019274_21 euxassay_019274_22 euxassay_019274_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13870Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13870_wholemount_strong.wlz
13870_wholemount_moderate.wlz
13870_wholemount_weak.wlz
13870_wholemount_possible.wlz
13870_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13870_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T70417
Entity Detected:Mir339, microRNA 339 ( MGI:3619354)
Sequence:sense strand is shown

>T70417
TGAGCGCCTCGGCGACAGAGCCG
Notes:The probe used by the EURExpress consortium to detect the presence of miRNA mmu-miR-339-3p was custom designed and ordered from Sigma-Exiqon by the EURExpress partner in Geneva and then distributed to the ISH generating units within the consortium.
Chemistry:LNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:13871 same embryo
 EurExpress:euxassay_019274 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS