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EMAGE:13879

Nr5a1 nuclear receptor subfamily 5, group A, member 1 ( MGI:1346833)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13879 EMAGE:13879 EMAGE:13879 EMAGE:13879 EMAGE:13879
"Pseudo-wholemount" of euxassay_019471. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_019471_01 euxassay_019471_02 euxassay_019471_03 euxassay_019471_04
EMAGE:13879 EMAGE:13879 EMAGE:13879 EMAGE:13879 EMAGE:13879
euxassay_019471_05 euxassay_019471_06 euxassay_019471_07 euxassay_019471_08 euxassay_019471_09
EMAGE:13879 EMAGE:13879 EMAGE:13879 EMAGE:13879 EMAGE:13879
euxassay_019471_10 euxassay_019471_11 euxassay_019471_12 euxassay_019471_13 euxassay_019471_14
EMAGE:13879 EMAGE:13879 EMAGE:13879 EMAGE:13879 EMAGE:13879
euxassay_019471_15 euxassay_019471_16 euxassay_019471_17 euxassay_019471_18 euxassay_019471_19
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euxassay_019471_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13879Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13879_wholemount_strong.wlz
13879_wholemount_moderate.wlz
13879_wholemount_weak.wlz
13879_wholemount_possible.wlz
13879_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13879_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T55132
Entity Detected:Nr5a1, nuclear receptor subfamily 5, group A, member 1 ( MGI:1346833)
Sequence:sense strand is shown

>T55132
ATCTACCGCCAAGTCCAGTACGGCAAGGAAGACAGCATCCTGCTGGTTAGTGGACAGGAGGTGGAGCTGA
GCACAGTGGCTGTCGAGGCTGGCTCCCTGCTGCACAGCCTGGTGCTGCGGGCCCAAGAGTTAGTGCTCCA
GTTGCATGCACTGCAGCTGGACCGCCAGGAGTTCGTCTGTCTCAAGTTCCTCATCCTCTTCAGCCTCGAT
GTGAAATTCCTGAACAACCACAGCCTCGTAAAGGACGCCCAGGAAAAGGCCAACGCTGCCCTGTTGGATT
ACACCTTGTGTCACTACCCACACTGCGGGGACAAATTCCAGCAGTTGCTATTGTGCCTGGTGGAGGTGCG
GGCCCTGAGCATGCAGGCCAAGGAACAGTACCTGTACCACAAGCATTTGGGCAACGAGATGCCCCGCAAC
AACCTTCTCATTGAGATGCTGCAGGCCAAGCAGACTTGACTGGGTGCCAGGCAGCGGGCATAGCAGGATG
CCACTGCCTCCAAAAGACTCCTTGCATTAGGTGATCCAGGAGCCCTGTCACTAAGCCCCTGCCCTGGAGC
TCCAGAGCTGTGTGTTTGGGCAAGGATGGGCGGGGATTGGCCGGGGCAGGTTGCTTTACTAGCCATTGGC
CTGTGTCCGCCACTTGGAGTGCCCCAAAGATCCTTCTGGCCATTCCTTCCTCCATCAGCCCCCAGCTTTT
TTTCCTGGTATCTGAGGTCCCAGGAGGAGGCTCAGGATTCCCTGGTGGGTCTGGCTGTCCTTGGTCAGAG
GTCATCCTTCCCCTCTCTCCTGTTATCAGAGGCAAAGGAAGGTCTACAGGCATCAATAGGGCAAAGGAGG
GGGTCTCCAGACTCCACTGAAGCAGGAAGTCCACTGTTGTAAACTGAGTTTGCTAAATTGGGTCCCCAGA
GGATACCATGAGAGTGGGTAGGGCAAAAAGAGCCTTCCGCCCTCTACCCATCTAATTCTGATCCTCTACC
TGTAAGGAAGGACTTTGGTGTGATCATCCTTCTCCCAGGGCCCGGCTACCCAGGGAGGAGGAGTCTGGTG
TAGCCAACATTCCTGCCCTAACCCTGCCCATCACAGCTGGCTGGGCTGGTATTTATCT
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:ATCTACCGCCAAGTCCAGTACGG; Reverse Primer - name:unspecified, sequence:AGATAAATACCAGCCCAGCCAGC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_019471 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS