EMAGE mouse gene expression spatial database

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EMAGE:13921

Lin54 lin-54 homolog (C. elegans) ( MGI:2140902)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_007854. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_007854_01	euxassay_007854_02	euxassay_007854_03	euxassay_007854_04

euxassay_007854_05	euxassay_007854_06	euxassay_007854_07	euxassay_007854_08	euxassay_007854_09

euxassay_007854_10	euxassay_007854_11	euxassay_007854_12	euxassay_007854_13	euxassay_007854_14

euxassay_007854_15	euxassay_007854_16	euxassay_007854_17	euxassay_007854_18	euxassay_007854_19

euxassay_007854_20	euxassay_007854_21	euxassay_007854_22	euxassay_007854_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

13921_wholemount_strong.wlz

13921_wholemount_moderate.wlz

13921_wholemount_weak.wlz

13921_wholemount_possible.wlz

13921_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:13921_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2624
Entity Detected:	Lin54, lin-54 homolog (C. elegans) ( MGI:2140902)
Sequence:	sense strand is shown >T2624 ATAATGCAGGCATCCTTAGCACCTCGGTCTAGAGTTTTTAAGTAAACTTTGTACAAATGTAAATTAGTCT AAGAGGACAAAATAATATCTAATCAAGTTATTTTTCAAAAGACTGCAATAAGTTTTTGGTCTAAACCTAA ACTTTGTTCATTTTGTATATATTATGTGTTAATTCTAATAGCACCATTGTGATGTGTATTTATATACAGT GTGCACAAAATGTTTGTGAATTTTTTATTATAATTGTAGATTATGTATGATGGCATTGCTTAAGATTGTT TTGCTTGTAAGAATTTGAAGGTGCAATCAAAGCTACGAGTTTGGATTTTTAAGAAGCCTTTAACCTATCA GCCCCTTTCCTTCTGTGTGGTTCCAACTGAACAACTTTTTGTATTAGGCATTTGCATCAAATTGCTGAAC AAAGTTAATAGCCACATTAAATCACCAATTTCAAAAGATTATTTGGGGAGGGTTTGGTCTATAATTTTTA AGCCCTATTTACATCCTAAGGTAGA
Notes:	The probe template was PCR amplified from IMAGE:1400734 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1400734 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:13923 same embryo
	EMAGE:13922 same embryo
	EMAGE:13924 same embryo
	EMAGE:13920 same embryo
	EurExpress:euxassay_007854 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source