EMAGE mouse gene expression spatial database

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EMAGE:14058

Mrps34 mitochondrial ribosomal protein S34 ( MGI:1930188)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001682. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001682_01	euxassay_001682_02	euxassay_001682_03	euxassay_001682_04

euxassay_001682_05	euxassay_001682_06	euxassay_001682_07	euxassay_001682_08	euxassay_001682_09

euxassay_001682_10	euxassay_001682_11	euxassay_001682_12	euxassay_001682_13	euxassay_001682_14

euxassay_001682_15	euxassay_001682_16	euxassay_001682_17	euxassay_001682_18	euxassay_001682_19

euxassay_001682_20	euxassay_001682_21	euxassay_001682_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14058_wholemount_strong.wlz

14058_wholemount_moderate.wlz

14058_wholemount_weak.wlz

14058_wholemount_possible.wlz

14058_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14058_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

thymus primordium

weak

regional

weak expression: see section 11 12 13

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2726
Entity Detected:	Mrps34, mitochondrial ribosomal protein S34 ( MGI:1930188)
Sequence:	sense strand is shown >T2726 TCNAGCCAAGATTCGGCACGAGGAGAAAGTAAGACCCCGGCTGATCGCTGAGCTGGCTCGCCGCGTGCGC GCCTTGCGCGAGCAGCGGAACCAGCCGCGAGATTCGCAGCTCTACGCCCTAGACTACGAGACGCTGACCC GGCCGCACTCCGGTCGCCGGCTGCCGGTACGCGCCTGGGCCGACGTGCGTCGCGAGAGCCGCCTCCTACA GCTGCTCGCCCGCCTCCCCTTGTTCGGCCTGGGCCGTCTGGTTACCCGCAAGTCCTGGCTGTGGCAGCAC GACGAGCCATGCTACTGGCGCCTCACGCGTGTGAGGCCCGACTACACGGCGCAGAACTTGGACCACGGGA GGGCCTGGGGCATCCTGACTTTCAAAGGGAAGAGTGAGGATACGGCTCGGGAAATCGAGCAAGTCATGTA CCACGATTGGCGTTTGGTACCCAAGTACGAGGAGGAGGCCTTCACTGCGTTCACTGCGAAACCAGAGGAC AGATTGAATTCTGTCCCCTATCCACCTCTGCTGCGAGCCATGATCCTCGCTGAACGGCAGA
Notes:	The probe template was PCR amplified from IMAGE:1513089 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1513089 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14057 same assay
	EMAGE:14055 same embryo
	EMAGE:14054 same embryo
	EMAGE:14053 same embryo
	EurExpress:euxassay_001682 same experiment
	EMAGE:14056 same embryo
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source